Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PVX entry

There are 15 chains in PDB entry 8PVX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 1	ILE 13
C	THR 5	GLU 72
C	GLY 74	PHE 375
J	MET 1	ILE 13
E	THR 5	GLU 72
E	GLY 74	PHE 375
F	MET 1	ILE 13
A	THR 5	GLU 72
A	GLY 74	PHE 375
I	MET 1	ILE 13
D	THR 5	GLU 72
D	GLY 74	PHE 375
G	MET 1	ILE 13
B	THR 5	GLU 72
B	GLY 74	PHE 375

There are100 helices in PDB entry 8PVX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	2	13	Right-handed alpha
Helix 2	AA2	C	55	62	Right-handed alpha
Helix 3	AA3	C	78	92	Right-handed alpha
Helix 4	AA4	C	97	101	Right-handed 310
Helix 5	AA5	C	112	126	Right-handed alpha
Helix 6	AA6	C	137	145	Right-handed alpha
Helix 7	AA7	C	172	175	Right-handed 310
Helix 8	AA8	C	180	196	Right-handed alpha
Helix 9	AA9	C	202	217	Right-handed alpha
Helix 10	AB1	C	222	233	Right-handed alpha
Helix 11	AB2	C	252	263	Right-handed alpha
Helix 12	AB3	C	264	267	Right-handed 310
Helix 13	AB4	C	273	285	Right-handed alpha
Helix 14	AB5	C	286	295	Right-handed alpha
Helix 15	AB6	C	301	306	Right-handed 310
Helix 16	AB7	C	308	321	Right-handed alpha
Helix 17	AB8	C	334	349	Right-handed alpha
Helix 18	AB9	C	352	356	Right-handed 310
Helix 19	AC1	C	359	363	Right-handed alpha
Helix 20	AC2	C	367	374	Right-handed 310
Helix 21	AC3	J	2	13	Right-handed alpha
Helix 22	AC4	E	55	62	Right-handed alpha
Helix 23	AC5	E	78	92	Right-handed alpha
Helix 24	AC6	E	97	101	Right-handed 310
Helix 25	AC7	E	112	126	Right-handed alpha
Helix 26	AC8	E	137	145	Right-handed alpha
Helix 27	AC9	E	172	175	Right-handed 310
Helix 28	AD1	E	180	196	Right-handed alpha
Helix 29	AD2	E	202	217	Right-handed alpha
Helix 30	AD3	E	222	233	Right-handed alpha
Helix 31	AD4	E	252	263	Right-handed alpha
Helix 32	AD5	E	264	267	Right-handed 310
Helix 33	AD6	E	273	285	Right-handed alpha
Helix 34	AD7	E	286	296	Right-handed alpha
Helix 35	AD8	E	301	306	Right-handed 310
Helix 36	AD9	E	308	321	Right-handed alpha
Helix 37	AE1	E	337	349	Right-handed alpha
Helix 38	AE2	E	352	356	Right-handed 310
Helix 39	AE3	E	359	363	Right-handed alpha
Helix 40	AE4	E	367	372	Right-handed 310
Helix 41	AE5	F	2	13	Right-handed alpha
Helix 42	AE6	A	55	62	Right-handed alpha
Helix 43	AE7	A	78	92	Right-handed alpha
Helix 44	AE8	A	97	101	Right-handed 310
Helix 45	AE9	A	112	126	Right-handed alpha
Helix 46	AF1	A	137	145	Right-handed alpha
Helix 47	AF2	A	172	175	Right-handed 310
Helix 48	AF3	A	180	196	Right-handed alpha
Helix 49	AF4	A	202	217	Right-handed alpha
Helix 50	AF5	A	222	233	Right-handed alpha
Helix 51	AF6	A	252	263	Right-handed alpha
Helix 52	AF7	A	264	267	Right-handed 310
Helix 53	AF8	A	273	285	Right-handed alpha
Helix 54	AF9	A	286	295	Right-handed alpha
Helix 55	AG1	A	301	306	Right-handed 310
Helix 56	AG2	A	308	321	Right-handed alpha
Helix 57	AG3	A	334	349	Right-handed alpha
Helix 58	AG4	A	351	356	Right-handed 310
Helix 59	AG5	A	359	363	Right-handed alpha
Helix 60	AG6	A	367	374	Right-handed 310
Helix 61	AG7	I	2	13	Right-handed alpha
Helix 62	AG8	D	55	62	Right-handed alpha
Helix 63	AG9	D	78	92	Right-handed alpha
Helix 64	AH1	D	97	101	Right-handed 310
Helix 65	AH2	D	112	126	Right-handed alpha
Helix 66	AH3	D	137	145	Right-handed alpha
Helix 67	AH4	D	172	175	Right-handed 310
Helix 68	AH5	D	180	196	Right-handed alpha
Helix 69	AH6	D	202	217	Right-handed alpha
Helix 70	AH7	D	222	233	Right-handed alpha
Helix 71	AH8	D	252	263	Right-handed alpha
Helix 72	AH9	D	264	267	Right-handed 310
Helix 73	AI1	D	273	285	Right-handed alpha
Helix 74	AI2	D	286	296	Right-handed alpha
Helix 75	AI3	D	301	306	Right-handed 310
Helix 76	AI4	D	308	321	Right-handed alpha
Helix 77	AI5	D	334	349	Right-handed alpha
Helix 78	AI6	D	352	356	Right-handed 310
Helix 79	AI7	D	359	363	Right-handed alpha
Helix 80	AI8	D	367	374	Right-handed 310
Helix 81	AI9	G	2	13	Right-handed alpha
Helix 82	AJ1	B	55	62	Right-handed alpha
Helix 83	AJ2	B	78	92	Right-handed alpha
Helix 84	AJ3	B	97	101	Right-handed 310
Helix 85	AJ4	B	112	126	Right-handed alpha
Helix 86	AJ5	B	137	145	Right-handed alpha
Helix 87	AJ6	B	172	175	Right-handed 310
Helix 88	AJ7	B	180	196	Right-handed alpha
Helix 89	AJ8	B	202	217	Right-handed alpha
Helix 90	AJ9	B	222	233	Right-handed alpha
Helix 91	AK1	B	252	263	Right-handed alpha
Helix 92	AK2	B	264	267	Right-handed 310
Helix 93	AK3	B	273	285	Right-handed alpha
Helix 94	AK4	B	286	296	Right-handed alpha
Helix 95	AK5	B	301	306	Right-handed 310
Helix 96	AK6	B	308	321	Right-handed alpha
Helix 97	AK7	B	334	349	Right-handed alpha
Helix 98	AK8	B	352	356	Right-handed 310
Helix 99	AK9	B	359	363	Right-handed alpha
Helix 100	AL1	B	367	374	Right-handed 310

There are 30 sheets in PDB entry 8PVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	8	12	anti-parallel
Strand 3	C	103	107	parallel
Strand 4	C	131	136	parallel
Strand 5	C	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	E	169	170	anti-parallel
Strand 3	E	159	166	anti-parallel
Strand 4	E	176	179	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	E	169	170	anti-parallel
Strand 3	E	159	166	anti-parallel
Strand 4	E	150	155	anti-parallel
Strand 5	E	297	299	parallel
Strand 6	E	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	159	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	299	parallel
Strand 5	C	329	330	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	159	166	anti-parallel
Strand 3	C	169	170	anti-parallel
Strand 4	A	41	42	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	8	12	anti-parallel
Strand 3	E	103	107	parallel
Strand 4	E	131	136	parallel
Strand 5	E	357	358	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	8	12	anti-parallel
Strand 3	A	103	107	parallel
Strand 4	A	131	136	parallel
Strand 5	A	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	159	166	anti-parallel
Strand 3	A	176	179	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	159	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	299	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	8	12	anti-parallel
Strand 3	D	103	107	parallel
Strand 4	D	131	136	parallel
Strand 5	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	179	first strand
Strand 2	D	159	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	299	parallel
Strand 5	D	329	330	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	179	first strand
Strand 2	D	159	166	anti-parallel
Strand 3	D	169	170	anti-parallel
Strand 4	B	41	42	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	103	107	parallel
Strand 4	B	131	136	parallel
Strand 5	B	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	159	166	anti-parallel
Strand 3	B	176	179	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	159	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	299	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PVX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVX