Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PVY entry

There are 16 chains in PDB entry 8PVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 7	LEU 312
B	MET 1	LYS 252
C	GLN 7	LEU 312
D	MET 1	LYS 252
E	MET 1	LEU 383
F	MET 1	LEU 383
G	GLN 7	LEU 312
H	MET 1	LYS 252
I	GLN 7	LEU 312
J	MET 1	LYS 252
K	MET 1	LEU 383
L	MET 1	LEU 383
M	GLU 81	GLU 317
N	GLU 81	GLU 317
O	GLU 81	GLU 317
P	GLU 81	GLU 317

There are140 helices in PDB entry 8PVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	93	112	Right-handed alpha
Helix 3	AA3	A	132	146	Right-handed alpha
Helix 4	AA4	A	225	234	Right-handed alpha
Helix 5	AA5	A	234	252	Right-handed alpha
Helix 6	AA6	A	257	279	Right-handed alpha
Helix 7	AA7	A	279	312	Right-handed alpha
Helix 8	AA8	B	6	19	Right-handed alpha
Helix 9	AA9	B	76	84	Right-handed alpha
Helix 10	AB1	B	86	89	Right-handed 310
Helix 11	AB2	B	106	121	Right-handed alpha
Helix 12	AB3	B	164	168	Right-handed 310
Helix 13	AB4	B	182	193	Right-handed alpha
Helix 14	AB5	B	203	252	Right-handed alpha
Helix 15	AB6	C	16	27	Right-handed alpha
Helix 16	AB7	C	93	112	Right-handed alpha
Helix 17	AB8	C	132	146	Right-handed alpha
Helix 18	AB9	C	225	233	Right-handed alpha
Helix 19	AC1	C	233	252	Right-handed alpha
Helix 20	AC2	C	257	279	Right-handed alpha
Helix 21	AC3	C	279	311	Right-handed alpha
Helix 22	AC4	D	6	18	Right-handed alpha
Helix 23	AC5	D	76	84	Right-handed alpha
Helix 24	AC6	D	86	89	Right-handed 310
Helix 25	AC7	D	106	121	Right-handed alpha
Helix 26	AC8	D	164	168	Right-handed 310
Helix 27	AC9	D	182	192	Right-handed alpha
Helix 28	AD1	D	193	196	Right-handed 310
Helix 29	AD2	D	203	252	Right-handed alpha
Helix 30	AD3	E	2	8	Right-handed alpha
Helix 31	AD4	E	14	24	Right-handed alpha
Helix 32	AD5	E	111	133	Right-handed alpha
Helix 33	AD6	E	135	148	Right-handed alpha
Helix 34	AD7	E	148	154	Right-handed alpha
Helix 35	AD8	E	222	227	Right-handed alpha
Helix 36	AD9	E	230	234	Right-handed 310
Helix 37	AE1	E	249	280	Right-handed alpha
Helix 38	AE2	E	377	381	Right-handed 310
Helix 39	AE3	F	3	8	Right-handed alpha
Helix 40	AE4	F	11	13	Right-handed 310
Helix 41	AE5	F	14	24	Right-handed alpha
Helix 42	AE6	F	99	104	Right-handed alpha
Helix 43	AE7	F	111	133	Right-handed alpha
Helix 44	AE8	F	135	147	Right-handed alpha
Helix 45	AE9	F	222	228	Right-handed alpha
Helix 46	AF1	F	245	279	Right-handed alpha
Helix 47	AF2	F	357	362	Right-handed alpha
Helix 48	AF3	G	16	27	Right-handed alpha
Helix 49	AF4	G	93	112	Right-handed alpha
Helix 50	AF5	G	132	147	Right-handed alpha
Helix 51	AF6	G	225	252	Right-handed alpha
Helix 52	AF7	G	257	312	Right-handed alpha
Helix 53	AF8	H	6	20	Right-handed alpha
Helix 54	AF9	H	76	84	Right-handed alpha
Helix 55	AG1	H	86	89	Right-handed 310
Helix 56	AG2	H	106	121	Right-handed alpha
Helix 57	AG3	H	164	169	Right-handed 310
Helix 58	AG4	H	182	193	Right-handed alpha
Helix 59	AG5	H	203	252	Right-handed alpha
Helix 60	AG6	I	16	27	Right-handed alpha
Helix 61	AG7	I	93	111	Right-handed alpha
Helix 62	AG8	I	132	146	Right-handed alpha
Helix 63	AG9	I	225	233	Right-handed alpha
Helix 64	AH1	I	234	252	Right-handed alpha
Helix 65	AH2	I	257	279	Right-handed alpha
Helix 66	AH3	I	279	306	Right-handed alpha
Helix 67	AH4	J	6	20	Right-handed alpha
Helix 68	AH5	J	76	84	Right-handed alpha
Helix 69	AH6	J	86	89	Right-handed 310
Helix 70	AH7	J	106	121	Right-handed alpha
Helix 71	AH8	J	164	168	Right-handed 310
Helix 72	AH9	J	182	193	Right-handed alpha
Helix 73	AI1	J	203	252	Right-handed alpha
Helix 74	AI2	K	11	13	Right-handed 310
Helix 75	AI3	K	14	24	Right-handed alpha
Helix 76	AI4	K	111	133	Right-handed alpha
Helix 77	AI5	K	135	148	Right-handed alpha
Helix 78	AI6	K	148	153	Right-handed alpha
Helix 79	AI7	K	222	230	Right-handed alpha
Helix 80	AI8	K	230	236	Right-handed alpha
Helix 81	AI9	K	245	261	Right-handed alpha
Helix 82	AJ1	K	262	277	Right-handed alpha
Helix 83	AJ2	K	278	282	Right-handed 310
Helix 84	AJ3	K	358	365	Right-handed alpha
Helix 85	AJ4	K	368	375	Right-handed alpha
Helix 86	AJ5	L	2	10	Right-handed alpha
Helix 87	AJ6	L	14	24	Right-handed alpha
Helix 88	AJ7	L	111	132	Right-handed alpha
Helix 89	AJ8	L	133	135	Right-handed 310
Helix 90	AJ9	L	136	148	Right-handed alpha
Helix 91	AK1	L	222	230	Right-handed alpha
Helix 92	AK2	L	245	277	Right-handed alpha
Helix 93	AK3	L	278	282	Right-handed 310
Helix 94	AK4	L	358	365	Right-handed alpha
Helix 95	AK5	L	366	368	Right-handed 310
Helix 96	AK6	L	369	374	Right-handed alpha
Helix 97	AK7	M	102	107	Right-handed 310
Helix 98	AK8	M	119	137	Right-handed alpha
Helix 99	AK9	M	162	169	Right-handed alpha
Helix 100	AL1	M	184	194	Right-handed alpha
Helix 101	AL2	M	229	238	Right-handed alpha
Helix 102	AL3	M	250	255	Right-handed alpha
Helix 103	AL4	M	259	269	Right-handed alpha
Helix 104	AL5	M	270	272	Right-handed 310
Helix 105	AL6	M	290	294	Right-handed 310
Helix 106	AL7	M	310	317	Right-handed alpha
Helix 107	AL8	N	103	107	Right-handed 310
Helix 108	AL9	N	119	135	Right-handed alpha
Helix 109	AM1	N	162	169	Right-handed alpha
Helix 110	AM2	N	183	192	Right-handed alpha
Helix 111	AM3	N	201	205	Right-handed 310
Helix 112	AM4	N	233	238	Right-handed alpha
Helix 113	AM5	N	258	269	Right-handed alpha
Helix 114	AM6	N	270	272	Right-handed 310
Helix 115	AM7	N	289	291	Right-handed 310
Helix 116	AM8	N	292	298	Right-handed alpha
Helix 117	AM9	N	307	311	Right-handed 310
Helix 118	AN1	O	119	133	Right-handed alpha
Helix 119	AN2	O	163	170	Right-handed alpha
Helix 120	AN3	O	183	192	Right-handed alpha
Helix 121	AN4	O	199	204	Right-handed 310
Helix 122	AN5	O	229	237	Right-handed alpha
Helix 123	AN6	O	249	255	Right-handed alpha
Helix 124	AN7	O	258	269	Right-handed alpha
Helix 125	AN8	O	270	272	Right-handed 310
Helix 126	AN9	O	283	286	Right-handed 310
Helix 127	AO1	O	288	298	Right-handed alpha
Helix 128	AO2	O	307	311	Right-handed 310
Helix 129	AO3	P	103	107	Right-handed 310
Helix 130	AO4	P	119	134	Right-handed alpha
Helix 131	AO5	P	135	137	Right-handed 310
Helix 132	AO6	P	162	169	Right-handed alpha
Helix 133	AO7	P	183	194	Right-handed alpha
Helix 134	AO8	P	199	204	Right-handed 310
Helix 135	AO9	P	229	237	Right-handed alpha
Helix 136	AP1	P	249	255	Right-handed alpha
Helix 137	AP2	P	258	268	Right-handed alpha
Helix 138	AP3	P	269	272	Right-handed 310
Helix 139	AP4	P	290	293	Right-handed 310
Helix 140	AP5	P	294	299	Right-handed alpha

There are 27 sheets in PDB entry 8PVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	B	141	148	anti-parallel
Strand 4	B	157	158	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	11	15	parallel
Strand 3	A	71	80	parallel
Strand 4	A	35	42	anti-parallel
Strand 5	A	116	125	anti-parallel
Strand 6	A	150	160	parallel
Strand 7	A	165	174	anti-parallel
Strand 8	B	141	148	anti-parallel
Strand 9	B	126	133	anti-parallel
Strand 10	B	91	99	parallel
Strand 11	B	24	33	anti-parallel
Strand 12	B	53	61	anti-parallel
Strand 13	B	2	5	parallel
Strand 14	B	160	161	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	D	140	148	anti-parallel
Strand 4	D	157	158	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	C	11	15	parallel
Strand 3	C	71	79	parallel
Strand 4	C	35	42	anti-parallel
Strand 5	C	116	125	anti-parallel
Strand 6	C	150	160	parallel
Strand 7	C	165	174	anti-parallel
Strand 8	D	140	148	anti-parallel
Strand 9	D	126	134	anti-parallel
Strand 10	D	91	99	parallel
Strand 11	D	24	30	anti-parallel
Strand 12	D	53	61	anti-parallel
Strand 13	D	2	5	parallel
Strand 14	D	160	161	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	55	59	anti-parallel
Strand 3	E	69	72	anti-parallel
Strand 4	E	83	85	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	65	66	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	176	first strand
Strand 2	E	201	204	anti-parallel
Strand 3	E	218	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	55	59	anti-parallel
Strand 3	F	69	72	anti-parallel
Strand 4	F	83	85	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	F	65	66	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	201	203	anti-parallel
Strand 3	F	219	221	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	213	first strand
Strand 2	G	165	174	anti-parallel
Strand 3	J	141	148	anti-parallel
Strand 4	J	157	158	anti-parallel

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There are 14 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	219	first strand
Strand 2	G	11	15	parallel
Strand 3	G	71	79	parallel
Strand 4	G	35	42	anti-parallel
Strand 5	G	117	125	anti-parallel
Strand 6	G	150	160	parallel
Strand 7	G	165	174	anti-parallel
Strand 8	J	141	148	anti-parallel
Strand 9	J	126	133	anti-parallel
Strand 10	J	91	99	parallel
Strand 11	J	24	33	anti-parallel
Strand 12	J	53	61	anti-parallel
Strand 13	J	2	5	parallel
Strand 14	J	160	161	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	158	first strand
Strand 2	H	141	148	anti-parallel
Strand 3	I	166	174	anti-parallel
Strand 4	I	212	213	anti-parallel

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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	161	first strand
Strand 2	H	2	5	parallel
Strand 3	H	53	61	parallel
Strand 4	H	24	33	anti-parallel
Strand 5	H	91	99	anti-parallel
Strand 6	H	126	134	parallel
Strand 7	H	141	148	anti-parallel
Strand 8	I	166	174	anti-parallel
Strand 9	I	150	159	anti-parallel
Strand 10	I	116	125	parallel
Strand 11	I	35	42	anti-parallel
Strand 12	I	71	79	anti-parallel
Strand 13	I	11	15	parallel
Strand 14	I	216	219	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	41	first strand
Strand 2	K	55	59	anti-parallel
Strand 3	K	69	72	anti-parallel
Strand 4	K	83	85	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	62	first strand
Strand 2	K	65	66	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	175	176	first strand
Strand 2	K	202	204	anti-parallel
Strand 3	K	218	220	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	41	first strand
Strand 2	L	55	59	anti-parallel
Strand 3	L	69	72	anti-parallel
Strand 4	L	83	84	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	171	177	anti-parallel
Strand 3	L	201	207	anti-parallel
Strand 4	L	218	221	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	155	160	first strand
Strand 2	M	143	148	anti-parallel
Strand 3	M	94	99	parallel
Strand 4	M	212	217	parallel
Strand 5	M	243	248	parallel
Strand 6	M	279	282	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	110	111	first strand
Strand 2	M	117	118	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	155	160	first strand
Strand 2	N	144	147	anti-parallel
Strand 3	N	95	97	parallel
Strand 4	N	212	217	parallel
Strand 5	N	243	248	parallel
Strand 6	N	280	282	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	110	111	first strand
Strand 2	N	117	118	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	155	160	first strand
Strand 2	O	144	148	anti-parallel
Strand 3	O	95	99	parallel
Strand 4	O	212	217	parallel
Strand 5	O	243	248	parallel
Strand 6	O	279	282	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	110	111	first strand
Strand 2	O	117	118	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	155	160	first strand
Strand 2	P	144	148	anti-parallel
Strand 3	P	95	99	parallel
Strand 4	P	212	217	parallel
Strand 5	P	243	248	parallel
Strand 6	P	279	282	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	110	111	first strand
Strand 2	P	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVY