Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PWU entry

There are 5 chains in PDB entry 8PWU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 158	ASN 506
B	GLN 1	LYS 241
C	ALA 158	ASN 506
D	GLN 1	LYS 241
E	ALA 158	ILE 413

There are 85 helices in PDB entry 8PWU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	176	195	Right-handed alpha
Helix 2	AA2	A	199	201	Right-handed 310
Helix 3	AA3	A	202	222	Right-handed alpha
Helix 4	AA4	A	224	239	Right-handed alpha
Helix 5	AA5	A	303	321	Right-handed alpha
Helix 6	AA6	A	321	342	Right-handed alpha
Helix 7	AA7	A	353	364	Right-handed alpha
Helix 8	AA8	A	364	375	Right-handed alpha
Helix 9	AA9	A	375	400	Right-handed alpha
Helix 10	AB1	A	406	445	Right-handed alpha
Helix 11	AB2	A	451	505	Right-handed alpha
Helix 12	AB3	B	61	64	Right-handed 310
Helix 13	AB4	B	86	90	Right-handed 310
Helix 14	AB5	B	213	217	Right-handed 310
Helix 15	AB6	C	176	195	Right-handed alpha
Helix 16	AB7	C	199	201	Right-handed 310
Helix 17	AB8	C	202	222	Right-handed alpha
Helix 18	AB9	C	224	239	Right-handed alpha
Helix 19	AC1	C	303	321	Right-handed alpha
Helix 20	AC2	C	321	342	Right-handed alpha
Helix 21	AC3	C	353	364	Right-handed alpha
Helix 22	AC4	C	364	375	Right-handed alpha
Helix 23	AC5	C	375	400	Right-handed alpha
Helix 24	AC6	C	406	443	Right-handed alpha
Helix 25	AC7	C	451	504	Right-handed alpha
Helix 26	AC8	D	61	64	Right-handed 310
Helix 27	AC9	D	73	75	Right-handed 310
Helix 28	AD1	D	86	90	Right-handed 310
Helix 29	AD2	D	213	217	Right-handed 310
Helix 30	AD3	E	176	195	Right-handed alpha
Helix 31	AD4	E	199	201	Right-handed 310
Helix 32	AD5	E	202	222	Right-handed alpha
Helix 33	AD6	E	224	239	Right-handed alpha
Helix 34	AD7	E	303	321	Right-handed alpha
Helix 35	AD8	E	321	342	Right-handed alpha
Helix 36	AD9	E	353	364	Right-handed alpha
Helix 37	AE1	E	364	375	Right-handed alpha
Helix 38	AE2	E	375	400	Right-handed alpha
Helix 39	AE3	E	406	443	Right-handed alpha
Helix 40	AE4	E	444	446	Right-handed 310
Helix 41	AE5	E	451	505	Right-handed alpha
Helix 42	AE6	F	61	64	Right-handed 310
Helix 43	AE7	F	73	75	Right-handed 310
Helix 44	AE8	F	86	90	Right-handed 310
Helix 45	AE9	F	213	217	Right-handed 310
Helix 46	AF1	G	176	195	Right-handed alpha
Helix 47	AF2	G	199	201	Right-handed 310
Helix 48	AF3	G	202	222	Right-handed alpha
Helix 49	AF4	G	224	239	Right-handed alpha
Helix 50	AF5	G	303	321	Right-handed alpha
Helix 51	AF6	G	321	342	Right-handed alpha
Helix 52	AF7	G	353	364	Right-handed alpha
Helix 53	AF8	G	364	375	Right-handed alpha
Helix 54	AF9	G	375	400	Right-handed alpha
Helix 55	AG1	G	406	443	Right-handed alpha
Helix 56	AG2	G	444	446	Right-handed 310
Helix 57	AG3	G	451	504	Right-handed alpha
Helix 58	AG4	H	61	64	Right-handed 310
Helix 59	AG5	H	73	75	Right-handed 310
Helix 60	AG6	H	86	90	Right-handed 310
Helix 61	AG7	H	213	217	Right-handed 310
Helix 62	AG8	I	176	196	Right-handed alpha
Helix 63	AG9	I	201	222	Right-handed alpha
Helix 64	AH1	I	224	239	Right-handed alpha
Helix 65	AH2	I	303	321	Right-handed alpha
Helix 66	AH3	I	321	342	Right-handed alpha
Helix 67	AH4	I	353	364	Right-handed alpha
Helix 68	AH5	I	364	375	Right-handed alpha
Helix 69	AH6	I	375	400	Right-handed alpha
Helix 70	AH7	I	406	445	Right-handed alpha
Helix 71	AH8	I	451	506	Right-handed alpha
Helix 72	AH9	J	61	64	Right-handed 310
Helix 73	AI1	J	73	75	Right-handed 310
Helix 74	AI2	J	86	90	Right-handed 310
Helix 75	AI3	J	213	217	Right-handed 310
Helix 76	AI4	K	176	197	Right-handed alpha
Helix 77	AI5	K	202	222	Right-handed alpha
Helix 78	AI6	K	224	239	Right-handed alpha
Helix 79	AI7	K	303	321	Right-handed alpha
Helix 80	AI8	K	321	342	Right-handed alpha
Helix 81	AI9	K	353	364	Right-handed alpha
Helix 82	AJ1	K	364	375	Right-handed alpha
Helix 83	AJ2	K	375	400	Right-handed alpha
Helix 84	AJ3	K	406	445	Right-handed alpha
Helix 85	AJ4	K	451	506	Right-handed alpha

There are 41 sheets in PDB entry 8PWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	170	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	449	450	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	91	98	anti-parallel
Strand 5	B	106	109	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	91	98	anti-parallel
Strand 5	B	113	115	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	153	158	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	196	201	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	236	240	parallel
Strand 3	B	219	224	anti-parallel
Strand 4	B	167	172	anti-parallel
Strand 5	B	178	183	anti-parallel
Strand 6	B	187	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	236	240	parallel
Strand 3	B	219	224	anti-parallel
Strand 4	B	231	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	172	175	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	352	first strand
Strand 2	C	449	450	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	56	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	106	109	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	153	158	anti-parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	196	201	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	236	240	parallel
Strand 3	D	219	224	anti-parallel
Strand 4	D	167	172	anti-parallel
Strand 5	D	180	183	anti-parallel
Strand 6	D	187	188	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	167	first strand
Strand 2	E	170	175	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	352	first strand
Strand 2	E	449	450	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	56	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	140	first strand
Strand 2	F	153	158	anti-parallel
Strand 3	F	204	209	anti-parallel
Strand 4	F	196	201	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	236	240	parallel
Strand 3	F	219	224	anti-parallel
Strand 4	F	167	172	anti-parallel
Strand 5	F	179	183	anti-parallel
Strand 6	F	187	188	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	236	240	parallel
Strand 3	F	219	224	anti-parallel
Strand 4	F	231	232	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	167	first strand
Strand 2	G	170	175	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	351	352	first strand
Strand 2	G	449	450	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	153	158	anti-parallel
Strand 3	H	204	209	anti-parallel
Strand 4	H	196	201	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	147	first strand
Strand 2	H	236	240	parallel
Strand 3	H	219	224	anti-parallel
Strand 4	H	167	172	anti-parallel
Strand 5	H	180	183	anti-parallel
Strand 6	H	187	188	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	147	first strand
Strand 2	H	236	240	parallel
Strand 3	H	219	224	anti-parallel
Strand 4	H	231	232	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	167	first strand
Strand 2	I	170	175	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	351	352	first strand
Strand 2	I	449	450	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	46	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	91	98	anti-parallel
Strand 5	J	106	109	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	46	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	91	98	anti-parallel
Strand 5	J	113	115	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	138	140	first strand
Strand 2	J	153	159	anti-parallel
Strand 3	J	204	209	anti-parallel
Strand 4	J	196	201	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	147	first strand
Strand 2	J	236	240	parallel
Strand 3	J	219	224	anti-parallel
Strand 4	J	167	172	anti-parallel
Strand 5	J	180	183	anti-parallel
Strand 6	J	187	188	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	147	first strand
Strand 2	J	236	240	parallel
Strand 3	J	219	224	anti-parallel
Strand 4	J	231	232	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	161	167	first strand
Strand 2	K	170	175	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	351	352	first strand
Strand 2	K	449	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PWU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWU