Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PWV entry

There are 5 chains in PDB entry 8PWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 156	GLN 502
B	VAL 2	LYS 243
C	ASN 156	GLN 502
D	VAL 2	LYS 243
E	ASN 156	ARG 423

There are 59 helices in PDB entry 8PWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	156	159	Right-handed 310
Helix 2	AA2	A	176	195	Right-handed alpha
Helix 3	AA3	A	196	201	Right-handed alpha
Helix 4	AA4	A	202	222	Right-handed alpha
Helix 5	AA5	A	224	240	Right-handed alpha
Helix 6	AA6	A	301	321	Right-handed alpha
Helix 7	AA7	A	321	342	Right-handed alpha
Helix 8	AA8	A	353	364	Right-handed alpha
Helix 9	AA9	A	364	373	Right-handed alpha
Helix 10	AB1	A	375	396	Right-handed alpha
Helix 11	AB2	A	405	445	Right-handed alpha
Helix 12	AB3	A	451	499	Right-handed alpha
Helix 13	AB4	B	62	65	Right-handed 310
Helix 14	AB5	B	87	91	Right-handed 310
Helix 15	AB6	B	216	220	Right-handed 310
Helix 16	AB7	C	156	159	Right-handed 310
Helix 17	AB8	C	176	195	Right-handed alpha
Helix 18	AB9	C	196	201	Right-handed alpha
Helix 19	AC1	C	202	222	Right-handed alpha
Helix 20	AC2	C	224	240	Right-handed alpha
Helix 21	AC3	C	301	321	Right-handed alpha
Helix 22	AC4	C	321	342	Right-handed alpha
Helix 23	AC5	C	353	364	Right-handed alpha
Helix 24	AC6	C	364	373	Right-handed alpha
Helix 25	AC7	C	375	396	Right-handed alpha
Helix 26	AC8	C	405	445	Right-handed alpha
Helix 27	AC9	C	451	500	Right-handed alpha
Helix 28	AD1	D	62	65	Right-handed 310
Helix 29	AD2	D	87	91	Right-handed 310
Helix 30	AD3	D	216	220	Right-handed 310
Helix 31	AD4	E	156	159	Right-handed 310
Helix 32	AD5	E	176	194	Right-handed alpha
Helix 33	AD6	E	196	201	Right-handed alpha
Helix 34	AD7	E	202	222	Right-handed alpha
Helix 35	AD8	E	224	240	Right-handed alpha
Helix 36	AD9	E	301	321	Right-handed alpha
Helix 37	AE1	E	321	342	Right-handed alpha
Helix 38	AE2	E	353	364	Right-handed alpha
Helix 39	AE3	E	364	374	Right-handed alpha
Helix 40	AE4	E	375	396	Right-handed alpha
Helix 41	AE5	E	405	444	Right-handed alpha
Helix 42	AE6	E	451	501	Right-handed alpha
Helix 43	AE7	F	62	65	Right-handed 310
Helix 44	AE8	F	87	91	Right-handed 310
Helix 45	AE9	F	216	220	Right-handed 310
Helix 46	AF1	G	176	195	Right-handed alpha
Helix 47	AF2	G	196	201	Right-handed alpha
Helix 48	AF3	G	202	222	Right-handed alpha
Helix 49	AF4	G	224	240	Right-handed alpha
Helix 50	AF5	G	301	321	Right-handed alpha
Helix 51	AF6	G	321	342	Right-handed alpha
Helix 52	AF7	G	353	364	Right-handed alpha
Helix 53	AF8	G	364	373	Right-handed alpha
Helix 54	AF9	G	375	396	Right-handed alpha
Helix 55	AG1	G	405	445	Right-handed alpha
Helix 56	AG2	G	451	499	Right-handed alpha
Helix 57	AG3	H	62	65	Right-handed 310
Helix 58	AG4	H	87	91	Right-handed 310
Helix 59	AG5	H	216	220	Right-handed 310

There are 32 sheets in PDB entry 8PWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	172	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	449	450	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	111	115	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	111	115	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	104	107	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	199	204	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	238	242	parallel
Strand 3	B	221	227	anti-parallel
Strand 4	B	170	175	anti-parallel
Strand 5	B	182	186	anti-parallel
Strand 6	B	190	191	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	238	242	parallel
Strand 3	B	221	227	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	172	175	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	352	first strand
Strand 2	C	449	450	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	111	115	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	111	115	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	104	107	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	199	204	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	238	242	parallel
Strand 3	D	221	227	anti-parallel
Strand 4	D	170	175	anti-parallel
Strand 5	D	182	186	anti-parallel
Strand 6	D	190	191	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	238	242	parallel
Strand 3	D	221	227	anti-parallel
Strand 4	D	233	234	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	164	first strand
Strand 2	E	172	175	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	352	first strand
Strand 2	E	449	450	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	44	52	anti-parallel
Strand 6	F	57	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	104	107	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	139	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	207	212	anti-parallel
Strand 4	F	199	204	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	F	238	241	parallel
Strand 3	F	221	227	anti-parallel
Strand 4	F	170	175	anti-parallel
Strand 5	F	182	186	anti-parallel
Strand 6	F	190	191	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	F	238	241	parallel
Strand 3	F	221	227	anti-parallel
Strand 4	F	233	234	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	164	first strand
Strand 2	G	172	175	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	351	352	first strand
Strand 2	G	449	450	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	104	107	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	139	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	207	212	anti-parallel
Strand 4	H	199	204	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	145	first strand
Strand 2	H	238	242	parallel
Strand 3	H	221	227	anti-parallel
Strand 4	H	170	175	anti-parallel
Strand 5	H	182	186	anti-parallel
Strand 6	H	190	191	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	145	first strand
Strand 2	H	238	242	parallel
Strand 3	H	221	227	anti-parallel
Strand 4	H	233	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWV