Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PWW entry

There are 4 chains in PDB entry 8PWW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 156	MET 454
B	GLN 1	LYS 241
C	ASN 156	GLN 453
D	GLN 1	LYS 241

There are 30 helices in PDB entry 8PWW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	156	159	Right-handed 310
Helix 2	AA2	A	176	195	Right-handed alpha
Helix 3	AA3	A	196	201	Right-handed 310
Helix 4	AA4	A	202	222	Right-handed alpha
Helix 5	AA5	A	224	240	Right-handed alpha
Helix 6	AA6	A	250	272	Right-handed alpha
Helix 7	AA7	A	272	293	Right-handed alpha
Helix 8	AA8	A	304	315	Right-handed alpha
Helix 9	AA9	A	315	325	Right-handed alpha
Helix 10	AB1	A	326	352	Right-handed alpha
Helix 11	AB2	A	355	396	Right-handed alpha
Helix 12	AB3	A	402	451	Right-handed alpha
Helix 13	AB4	B	63	65	Right-handed 310
Helix 14	AB5	B	86	90	Right-handed 310
Helix 15	AB6	B	213	217	Right-handed 310
Helix 16	AB7	C	156	159	Right-handed 310
Helix 17	AB8	C	176	195	Right-handed alpha
Helix 18	AB9	C	196	201	Right-handed 310
Helix 19	AC1	C	202	222	Right-handed alpha
Helix 20	AC2	C	224	239	Right-handed alpha
Helix 21	AC3	C	253	272	Right-handed alpha
Helix 22	AC4	C	272	293	Right-handed alpha
Helix 23	AC5	C	304	315	Right-handed alpha
Helix 24	AC6	C	315	325	Right-handed alpha
Helix 25	AC7	C	326	350	Right-handed alpha
Helix 26	AC8	C	357	396	Right-handed alpha
Helix 27	AC9	C	402	451	Right-handed alpha
Helix 28	AD1	D	63	65	Right-handed 310
Helix 29	AD2	D	86	90	Right-handed 310
Helix 30	AD3	D	213	217	Right-handed 310

There are 16 sheets in PDB entry 8PWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	172	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	400	401	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	91	98	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	56	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	91	98	anti-parallel
Strand 4	B	106	109	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	153	159	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	196	201	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	236	240	parallel
Strand 3	B	218	224	anti-parallel
Strand 4	B	167	172	anti-parallel
Strand 5	B	179	183	anti-parallel
Strand 6	B	187	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	236	240	parallel
Strand 3	B	218	224	anti-parallel
Strand 4	B	231	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	172	175	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	400	401	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	56	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	106	109	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	141	first strand
Strand 2	D	153	159	anti-parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	196	201	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	236	240	parallel
Strand 3	D	218	224	anti-parallel
Strand 4	D	167	172	anti-parallel
Strand 5	D	179	183	anti-parallel
Strand 6	D	187	188	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	236	240	parallel
Strand 3	D	218	224	anti-parallel
Strand 4	D	231	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PWW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWW