Analysis of interatomic Contacts of Structural Units in PDB entry:
8PWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PWX entry

There are 2 chains in PDB entry 8PWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1ILE 243
B
 ILE 157PHE 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8PWX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
B
176 192Right-handed alpha
Helix 4
AA4
B
196 201Right-handed 310
Helix 5
AA5
B
202 222Right-handed alpha
Helix 6
AA6
B
224 240Right-handed alpha
Helix 7
AA7
B
300 321Right-handed alpha
Helix 8
AA8
B
321 341Right-handed alpha
Helix 9
AA9
B
353 364Right-handed alpha
Helix 10
AB1
B
364 374Right-handed alpha
Helix 11
AB2
B
375 402Right-handed alpha
Helix 12
AB3
B
404 443Right-handed alpha
Helix 13
AB4
B
451 505Right-handed alpha
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There are 7 sheets in PDB entry 8PWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
116 120parallel
Strand 3
A
92 102anti-parallel
Strand 4
A
32 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
199 204anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
240 242parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
170 175anti-parallel
Strand 3
A
222 227anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
172 175anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
449 450anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il