Analysis of interatomic Contacts of Structural Units in PDB entry:
8PX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PX9 entry

There are 2 chains in PDB entry 8PX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 580
B
 SER 8THR 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8PX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
18 40Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
58 111Right-handed alpha
Helix 5
AA5
A
113 119Right-handed alpha
Helix 6
AA6
A
121 147Right-handed alpha
Helix 7
AA7
A
147 164Right-handed alpha
Helix 8
AA8
A
166 215Right-handed alpha
Helix 9
AA9
A
215 222Right-handed alpha
Helix 10
AB1
A
224 278Right-handed alpha
Helix 11
AB2
A
282 325Right-handed alpha
Helix 12
AB3
A
383 393Right-handed alpha
Helix 13
AB4
A
408 412Right-handed 310
Helix 14
AB5
A
413 420Right-handed alpha
Helix 15
AB6
A
434 441Right-handed alpha
Helix 16
AB7
A
447 458Right-handed alpha
Helix 17
AB8
A
475 479Right-handed 310
Helix 18
AB9
A
482 497Right-handed alpha
Helix 19
AC1
A
512 527Right-handed alpha
Helix 20
AC2
A
538 544Right-handed alpha
Helix 21
AC3
A
561 569Right-handed alpha
Helix 22
AC4
A
569 577Right-handed alpha
Helix 23
AC5
B
9 16Right-handed alpha
Helix 24
AC6
B
18 40Right-handed alpha
Helix 25
AC7
B
41 54Right-handed alpha
Helix 26
AC8
B
61 111Right-handed alpha
Helix 27
AC9
B
113 118Right-handed alpha
Helix 28
AD1
B
121 146Right-handed alpha
Helix 29
AD2
B
147 164Right-handed alpha
Helix 30
AD3
B
166 215Right-handed alpha
Helix 31
AD4
B
215 222Right-handed alpha
Helix 32
AD5
B
224 278Right-handed alpha
Helix 33
AD6
B
282 326Right-handed alpha
Helix 34
AD7
B
383 393Right-handed alpha
Helix 35
AD8
B
408 412Right-handed 310
Helix 36
AD9
B
413 420Right-handed alpha
Helix 37
AE1
B
434 441Right-handed alpha
Helix 38
AE2
B
447 458Right-handed alpha
Helix 39
AE3
B
475 479Right-handed 310
Helix 40
AE4
B
482 497Right-handed alpha
Helix 41
AE5
B
512 527Right-handed alpha
Helix 42
AE6
B
538 544Right-handed alpha
Helix 43
AE7
B
561 569Right-handed alpha
Helix 44
AE8
B
569 577Right-handed alpha
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There are 6 sheets in PDB entry 8PX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 367first strand
Strand 2
A
345 352anti-parallel
Strand 3
A
399 404anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
Strand 4
A
373 377parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
466 467anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 368first strand
Strand 2
B
345 352anti-parallel
Strand 3
B
399 404anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
501 505parallel
Strand 3
B
531 535parallel
Strand 4
B
373 377parallel
Strand 5
B
547 552parallel
Strand 6
B
555 560anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 463first strand
Strand 2
B
466 467anti-parallel
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