Analysis of interatomic Contacts of Structural Units in PDB entry:
8PXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PXF entry

There are 2 chains in PDB entry 8PXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 213
B
 MET 1HIS 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8PXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
62 95Right-handed alpha
Helix 3
AA3
A
96 99Right-handed 310
Helix 4
AA4
A
120 129Right-handed alpha
Helix 5
AA5
A
129 137Right-handed alpha
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
165 178Right-handed alpha
Helix 8
AA8
A
188 201Right-handed alpha
Helix 9
AA9
B
2 13Right-handed alpha
Helix 10
AB1
B
62 95Right-handed alpha
Helix 11
AB2
B
96 99Right-handed 310
Helix 12
AB3
B
120 129Right-handed alpha
Helix 13
AB4
B
129 137Right-handed alpha
Helix 14
AB5
B
148 162Right-handed alpha
Helix 15
AB6
B
165 177Right-handed alpha
Helix 16
AB7
B
188 200Right-handed alpha
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There are 3 sheets in PDB entry 8PXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 26first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
51 60anti-parallel
Strand 5
B
51 60anti-parallel
Strand 6
B
39 46anti-parallel
Strand 7
B
29 36anti-parallel
Strand 8
B
18 26anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
111 116parallel
Strand 4
A
208 210anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
111 116parallel
Strand 4
B
208 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il