Analysis of interatomic Contacts of Structural Units in PDB entry:
8PYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PYH entry

There are 2 chains in PDB entry 8PYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 317
B
 SER -1LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8PYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
32 48Right-handed alpha
Helix 4
AA4
A
49 51Right-handed 310
Helix 5
AA5
A
53 74Right-handed alpha
Helix 6
AA6
A
75 89Right-handed alpha
Helix 7
AA7
A
92 101Right-handed alpha
Helix 8
AA8
A
102 120Right-handed alpha
Helix 9
AA9
A
132 145Right-handed alpha
Helix 10
AB1
A
146 160Right-handed alpha
Helix 11
AB2
A
181 185Right-handed 310
Helix 12
AB3
A
195 207Right-handed alpha
Helix 13
AB4
A
209 215Right-handed alpha
Helix 14
AB5
A
233 245Right-handed alpha
Helix 15
AB6
A
261 263Right-handed 310
Helix 16
AB7
A
308 314Right-handed 310
Helix 17
AB8
B
4 9Right-handed alpha
Helix 18
AB9
B
19 29Right-handed alpha
Helix 19
AC1
B
32 47Right-handed alpha
Helix 20
AC2
B
60 63Right-handed 310
Helix 21
AC3
B
64 74Right-handed alpha
Helix 22
AC4
B
75 89Right-handed alpha
Helix 23
AC5
B
92 101Right-handed alpha
Helix 24
AC6
B
102 119Right-handed alpha
Helix 25
AC7
B
132 144Right-handed alpha
Helix 26
AC8
B
146 160Right-handed alpha
Helix 27
AC9
B
181 185Right-handed 310
Helix 28
AD1
B
195 207Right-handed alpha
Helix 29
AD2
B
209 215Right-handed alpha
Helix 30
AD3
B
233 245Right-handed alpha
Helix 31
AD4
B
261 263Right-handed 310
Helix 32
AD5
B
308 314Right-handed 310
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There are 2 sheets in PDB entry 8PYH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
217 224anti-parallel
Strand 3
A
298 305parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
265 274anti-parallel
Strand 6
A
249 259anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
217 224anti-parallel
Strand 3
B
298 305parallel
Strand 4
B
284 292anti-parallel
Strand 5
B
265 274anti-parallel
Strand 6
B
249 259anti-parallel
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