Analysis of interatomic Contacts of Structural Units in PDB entry:
8PYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PYY entry

There is 1 chain in PDB entry 8PYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
29 46Right-handed alpha
Helix 3
AA3
A
61 74Right-handed alpha
Helix 4
AA4
A
86 97Right-handed alpha
Helix 5
AA5
A
108 119Right-handed alpha
Helix 6
AA6
A
136 142Right-handed alpha
Helix 7
AA7
A
176 192Right-handed alpha
Helix 8
AA8
A
206 218Right-handed alpha
Helix 9
AA9
A
230 240Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
280 292Right-handed alpha
Helix 12
AB3
A
313 317Right-handed 310
Helix 13
AB4
A
368 375Right-handed alpha
Helix 14
AB5
A
399 403Right-handed alpha
Helix 15
AB6
A
414 423Right-handed alpha
Helix 16
AB7
A
458 468Right-handed alpha
Helix 17
AB8
A
471 475Right-handed 310
Helix 18
AB9
A
494 506Right-handed alpha
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There are 7 sheets in PDB entry 8PYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
18 21anti-parallel
Strand 3
A
221 224parallel
Strand 4
A
197 200parallel
Strand 5
A
244 245parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
124 126parallel
Strand 3
A
99 104parallel
Strand 4
A
53 57parallel
Strand 5
A
77 81parallel
Strand 6
A
159 162parallel
Strand 7
A
172 175anti-parallel
Strand 8
A
364 365anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
296 302parallel
Strand 3
A
306 311anti-parallel
Strand 4
A
329 330anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
380 389anti-parallel
Strand 4
A
376 377anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
380 389anti-parallel
Strand 4
A
395 397anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
410 413anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 436first strand
Strand 2
A
442 450anti-parallel
Strand 3
A
478 481parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il