Analysis of interatomic Contacts of Structural Units in PDB entry:
8PYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PYZ entry

There are 3 chains in PDB entry 8PYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 1PHE 347
F
 GLY 1PHE 347
C
 GLY 1PHE 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8PYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
85 87Right-handed 310
Helix 2
AA2
E
99 104Right-handed alpha
Helix 3
AA3
E
105 107Right-handed 310
Helix 4
AA4
E
171 175Right-handed 310
Helix 5
AA5
E
325 332Right-handed alpha
Helix 6
AA6
F
85 87Right-handed 310
Helix 7
AA7
F
99 104Right-handed alpha
Helix 8
AA8
F
105 107Right-handed 310
Helix 9
AA9
F
171 175Right-handed 310
Helix 10
AB1
F
205 209Right-handed 310
Helix 11
AB2
F
325 332Right-handed alpha
Helix 12
AB3
C
85 87Right-handed 310
Helix 13
AB4
C
99 104Right-handed alpha
Helix 14
AB5
C
105 107Right-handed 310
Helix 15
AB6
C
171 175Right-handed 310
Helix 16
AB7
C
205 209Right-handed 310
Helix 17
AB8
C
325 332Right-handed alpha
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There are 3 sheets in PDB entry 8PYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
32 33first strand
Strand 3
E
36 48first strand
Strand 4
E
51 62anti-parallel
Strand 5
E
73 83anti-parallel
Strand 6
E
89 96anti-parallel
Strand 7
E
128 137anti-parallel
Strand 8
E
147 154anti-parallel
Strand 9
E
179 189anti-parallel
Strand 10
E
192 202anti-parallel
Strand 11
E
218 230anti-parallel
Strand 12
E
233 243anti-parallel
Strand 13
E
256 266anti-parallel
Strand 14
E
272 286anti-parallel
Strand 15
E
291 308anti-parallel
Strand 16
E
311 320anti-parallel
Strand 17
E
338 347anti-parallel
Strand 18
E
10 25anti-parallel
Strand 19
E
32 33anti-parallel
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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
32 33first strand
Strand 3
F
36 46first strand
Strand 4
F
52 62anti-parallel
Strand 5
F
73 83anti-parallel
Strand 6
F
89 96anti-parallel
Strand 7
F
128 137anti-parallel
Strand 8
F
147 154anti-parallel
Strand 9
F
179 189anti-parallel
Strand 10
F
192 202anti-parallel
Strand 11
F
218 230anti-parallel
Strand 12
F
233 243anti-parallel
Strand 13
F
256 266anti-parallel
Strand 14
F
272 286anti-parallel
Strand 15
F
291 306anti-parallel
Strand 16
F
311 320anti-parallel
Strand 17
F
338 347anti-parallel
Strand 18
F
10 25anti-parallel
Strand 19
F
32 33anti-parallel
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There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
32 33first strand
Strand 3
C
36 48first strand
Strand 4
C
51 62anti-parallel
Strand 5
C
73 83anti-parallel
Strand 6
C
89 96anti-parallel
Strand 7
C
128 137anti-parallel
Strand 8
C
147 154anti-parallel
Strand 9
C
179 187anti-parallel
Strand 10
C
192 202anti-parallel
Strand 11
C
218 230anti-parallel
Strand 12
C
233 247anti-parallel
Strand 13
C
253 266anti-parallel
Strand 14
C
272 286anti-parallel
Strand 15
C
291 308anti-parallel
Strand 16
C
311 320anti-parallel
Strand 17
C
338 347anti-parallel
Strand 18
C
10 25anti-parallel
Strand 19
C
32 33anti-parallel
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