Analysis of interatomic Contacts of Structural Units in PDB entry:
8PZ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PZ1 entry

There are 6 chains in PDB entry 8PZ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 26	GLY 807
B	LEU 22	ARG 392
C	CYS 25	PRO 85
D	GLU 26	SER 243
E	GLU 24	ASN 113
F	VAL 25	SER 427

There are 39 helices in PDB entry 8PZ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	67	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	129	145	Right-handed alpha
Helix 5	AA5	A	189	195	Right-handed alpha
Helix 6	AA6	A	215	233	Right-handed alpha
Helix 7	AA7	A	280	289	Right-handed alpha
Helix 8	AA8	A	298	315	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	542	553	Right-handed alpha
Helix 12	AB3	A	647	651	Right-handed 310
Helix 13	AB4	A	726	730	Right-handed 310
Helix 14	AB5	B	22	27	Right-handed 310
Helix 15	AB6	C	39	43	Right-handed 310
Helix 16	AB7	C	76	80	Right-handed 310
Helix 17	AB8	D	31	46	Right-handed alpha
Helix 18	AB9	D	47	62	Right-handed alpha
Helix 19	AC1	D	67	82	Right-handed alpha
Helix 20	AC2	D	84	99	Right-handed alpha
Helix 21	AC3	D	104	119	Right-handed alpha
Helix 22	AC4	D	137	154	Right-handed alpha
Helix 23	AC5	D	159	189	Right-handed alpha
Helix 24	AC6	D	190	205	Right-handed alpha
Helix 25	AC7	D	208	225	Right-handed alpha
Helix 26	AC8	D	227	241	Right-handed alpha
Helix 27	AC9	E	39	46	Right-handed alpha
Helix 28	AD1	E	51	60	Right-handed alpha
Helix 29	AD2	F	39	56	Right-handed alpha
Helix 30	AD3	F	62	86	Right-handed alpha
Helix 31	AD4	F	92	105	Right-handed alpha
Helix 32	AD5	F	124	150	Right-handed alpha
Helix 33	AD6	F	154	159	Right-handed alpha
Helix 34	AD7	F	186	189	Right-handed 310
Helix 35	AD8	F	190	209	Right-handed alpha
Helix 36	AD9	F	211	220	Right-handed alpha
Helix 37	AE1	F	224	228	Right-handed 310
Helix 38	AE2	F	240	250	Right-handed alpha
Helix 39	AE3	F	396	420	Right-handed alpha

There are 21 sheets in PDB entry 8PZ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	84	87	parallel
Strand 3	A	76	77	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	334	342	parallel
Strand 3	A	274	276	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	419	parallel
Strand 3	A	397	404	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	427	first strand
Strand 2	A	442	445	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	505	519	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	581	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	733	745	anti-parallel
Strand 14	A	767	778	anti-parallel
Strand 15	A	781	790	anti-parallel
Strand 16	A	802	805	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	656	first strand
Strand 2	A	663	665	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	225	231	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	268	271	anti-parallel
Strand 4	B	277	279	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	304	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	356	360	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	381	first strand
Strand 2	B	387	390	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	30	32	anti-parallel
Strand 3	F	423	425	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	234	first strand
Strand 2	F	174	182	anti-parallel
Strand 3	F	264	272	anti-parallel
Strand 4	F	255	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PZ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PZ1