Analysis of interatomic Contacts of Structural Units in PDB entry:
8PZ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PZ3 entry

There are 2 chains in PDB entry 8PZ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 193ARG 490
B
 ALA 194ARG 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8PZ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 208Right-handed alpha
Helix 2
AA2
A
221 225Right-handed 310
Helix 3
AA3
A
307 319Right-handed alpha
Helix 4
AA4
A
322 329Right-handed alpha
Helix 5
AA5
A
333 342Right-handed alpha
Helix 6
AA6
A
347 365Right-handed alpha
Helix 7
AA7
A
375 384Right-handed alpha
Helix 8
AA8
A
398 405Right-handed alpha
Helix 9
AA9
A
465 471Right-handed alpha
Helix 10
AB1
B
202 209Right-handed alpha
Helix 11
AB2
B
221 225Right-handed 310
Helix 12
AB3
B
307 319Right-handed alpha
Helix 13
AB4
B
322 329Right-handed alpha
Helix 14
AB5
B
333 342Right-handed alpha
Helix 15
AB6
B
347 364Right-handed alpha
Helix 16
AB7
B
375 384Right-handed alpha
Helix 17
AB8
B
398 405Right-handed alpha
Helix 18
AB9
B
428 430Right-handed 310
Helix 19
AC1
B
465 471Right-handed alpha
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There are 6 sheets in PDB entry 8PZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 200first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
244 245anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
250 253anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
B
195 200anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
264 269anti-parallel
Strand 4
A
285 290anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
412 414parallel
Strand 3
A
486 489anti-parallel
Strand 4
A
432 438anti-parallel
Strand 5
A
443 449anti-parallel
Strand 6
A
452 457anti-parallel
Strand 7
A
460 464anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
229 232anti-parallel
Strand 3
B
264 269anti-parallel
Strand 4
B
285 290anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 389first strand
Strand 2
B
412 414parallel
Strand 3
B
486 489anti-parallel
Strand 4
B
432 438anti-parallel
Strand 5
B
443 449anti-parallel
Strand 6
B
452 457anti-parallel
Strand 7
B
460 464anti-parallel
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