Analysis of interatomic Contacts of Structural Units in PDB entry:
8PZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PZM entry

There is 1 chain in PDB entry 8PZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 18LYS 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
62 70Right-handed alpha
Helix 4
AA4
A
106 124Right-handed alpha
Helix 5
AA5
A
142 158Right-handed alpha
Helix 6
AA6
A
182 212Right-handed alpha
Helix 7
AA7
A
218 233Right-handed alpha
Helix 8
AA8
A
242 250Right-handed alpha
Helix 9
AA9
A
251 259Right-handed alpha
Helix 10
AB1
A
303 310Right-handed 310
Helix 11
AB2
A
311 328Right-handed alpha
Helix 12
AB3
A
371 384Right-handed alpha
Helix 13
AB4
A
385 387Right-handed 310
Helix 14
AB5
A
398 406Right-handed alpha
Helix 15
AB6
A
416 431Right-handed alpha
Helix 16
AB7
A
440 448Right-handed 310
Helix 17
AB8
A
462 473Right-handed alpha
Helix 18
AB9
A
503 514Right-handed alpha
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There are 4 sheets in PDB entry 8PZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
176 180parallel
Strand 3
A
128 132parallel
Strand 4
A
36 43parallel
Strand 5
A
91 98parallel
Strand 6
A
80 83anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 241first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
332 342anti-parallel
Strand 4
A
282 292parallel
Strand 5
A
390 395parallel
Strand 6
A
480 484parallel
Strand 7
A
410 414anti-parallel
Strand 8
A
434 436parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
454 455parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 490first strand
Strand 2
A
497 498anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il