Analysis of interatomic Contacts of Structural Units in PDB entry:
8PZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PZP entry

There are 2 chains in PDB entry 8PZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21GLY 490
B
 U 1 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8PZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 47Right-handed alpha
Helix 2
AA2
A
52 55Right-handed 310
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
129 148Right-handed alpha
Helix 7
AA7
A
150 157Right-handed alpha
Helix 8
AA8
A
160 167Right-handed 310
Helix 9
AA9
A
177 184Right-handed alpha
Helix 10
AB1
A
185 203Right-handed alpha
Helix 11
AB2
A
209 230Right-handed alpha
Helix 12
AB3
A
232 243Right-handed alpha
Helix 13
AB4
A
250 264Right-handed alpha
Helix 14
AB5
A
277 287Right-handed alpha
Helix 15
AB6
A
290 295Right-handed alpha
Helix 16
AB7
A
301 306Right-handed alpha
Helix 17
AB8
A
321 335Right-handed alpha
Helix 18
AB9
A
340 349Right-handed alpha
Helix 19
AC1
A
354 358Right-handed 310
Helix 20
AC2
A
394 401Right-handed alpha
Helix 21
AC3
A
421 430Right-handed alpha
Helix 22
AC4
A
437 451Right-handed alpha
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There are 3 sheets in PDB entry 8PZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
375 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
464 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il