Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q00 entry

There are 4 chains in PDB entry 8Q00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 191	ARG 490
B	MET 1	GLY 75
C	GLY 191	ARG 490
D	MET 1	GLY 75

There are 26 helices in PDB entry 8Q00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	221	225	Right-handed 310
Helix 2	AA2	A	307	319	Right-handed alpha
Helix 3	AA3	A	322	328	Right-handed alpha
Helix 4	AA4	A	333	342	Right-handed alpha
Helix 5	AA5	A	347	364	Right-handed alpha
Helix 6	AA6	A	375	383	Right-handed alpha
Helix 7	AA7	A	391	393	Right-handed 310
Helix 8	AA8	A	398	405	Right-handed alpha
Helix 9	AA9	A	422	426	Right-handed 310
Helix 10	AB1	A	465	471	Right-handed alpha
Helix 11	AB2	B	22	35	Right-handed alpha
Helix 12	AB3	B	37	39	Right-handed 310
Helix 13	AB4	B	56	60	Right-handed 310
Helix 14	AB5	C	221	225	Right-handed 310
Helix 15	AB6	C	307	319	Right-handed alpha
Helix 16	AB7	C	322	328	Right-handed alpha
Helix 17	AB8	C	333	342	Right-handed alpha
Helix 18	AB9	C	347	364	Right-handed alpha
Helix 19	AC1	C	375	383	Right-handed alpha
Helix 20	AC2	C	391	393	Right-handed 310
Helix 21	AC3	C	398	405	Right-handed alpha
Helix 22	AC4	C	428	430	Right-handed 310
Helix 23	AC5	C	465	471	Right-handed alpha
Helix 24	AC6	D	22	35	Right-handed alpha
Helix 25	AC7	D	37	39	Right-handed 310
Helix 26	AC8	D	56	60	Right-handed 310

There are 9 sheets in PDB entry 8Q00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	212	216	anti-parallel
Strand 3	A	250	253	anti-parallel
Strand 4	A	244	247	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	285	290	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	412	414	parallel
Strand 3	A	486	489	anti-parallel
Strand 4	A	432	438	anti-parallel
Strand 5	A	443	449	anti-parallel
Strand 6	A	452	457	anti-parallel
Strand 7	A	460	464	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	481	482	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	199	first strand
Strand 2	C	212	216	anti-parallel
Strand 3	C	250	253	anti-parallel
Strand 4	C	244	247	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	229	232	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	285	290	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	412	414	parallel
Strand 3	C	486	489	anti-parallel
Strand 4	C	432	438	anti-parallel
Strand 5	C	443	449	anti-parallel
Strand 6	C	452	457	anti-parallel
Strand 7	C	460	464	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q00

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q00