Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q01 entry

There are 7 chains in PDB entry 8Q01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 140
M	ALA 2	LYS 278
G	ALA 2	ARG 141
r	LEU 508	PHE 571
S	GLU 2	TYR 256
b	LEU 17	LEU 302
c	LEU 17	LEU 302

There are 33 helices in PDB entry 8Q01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	88	Right-handed 310
Helix 2	AA2	M	5	23	Right-handed alpha
Helix 3	AA3	M	24	32	Right-handed alpha
Helix 4	AA4	M	36	48	Right-handed alpha
Helix 5	AA5	M	86	88	Right-handed 310
Helix 6	AA6	M	135	139	Right-handed 310
Helix 7	AA7	M	154	158	Right-handed 310
Helix 8	AA8	M	194	213	Right-handed alpha
Helix 9	AA9	M	215	221	Right-handed alpha
Helix 10	AB1	G	11	13	Right-handed 310
Helix 11	AB2	G	82	88	Right-handed 310
Helix 12	AB3	r	521	536	Right-handed alpha
Helix 13	AB4	r	546	548	Right-handed 310
Helix 14	AB5	S	43	55	Right-handed alpha
Helix 15	AB6	S	152	159	Right-handed alpha
Helix 16	AB7	S	180	182	Right-handed 310
Helix 17	AB8	S	195	198	Right-handed 310
Helix 18	AB9	b	35	39	Right-handed 310
Helix 19	AC1	b	41	46	Right-handed 310
Helix 20	AC2	b	48	56	Right-handed alpha
Helix 21	AC3	b	71	90	Right-handed alpha
Helix 22	AC4	b	107	112	Right-handed alpha
Helix 23	AC5	b	142	144	Right-handed 310
Helix 24	AC6	b	220	240	Right-handed alpha
Helix 25	AC7	b	273	295	Right-handed alpha
Helix 26	AC8	c	35	40	Right-handed alpha
Helix 27	AC9	c	41	46	Right-handed 310
Helix 28	AD1	c	48	55	Right-handed alpha
Helix 29	AD2	c	71	90	Right-handed alpha
Helix 30	AD3	c	107	112	Right-handed alpha
Helix 31	AD4	c	142	144	Right-handed 310
Helix 32	AD5	c	220	240	Right-handed alpha
Helix 33	AD6	c	273	295	Right-handed alpha

There are 21 sheets in PDB entry 8Q01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	103	118	anti-parallel
Strand 5	A	126	132	anti-parallel
Strand 6	A	58	66	anti-parallel
Strand 7	A	27	35	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	103	118	anti-parallel
Strand 5	A	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	46	53	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	60	first strand
Strand 2	M	72	84	parallel
Strand 3	M	174	191	anti-parallel
Strand 4	M	90	94	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	60	first strand
Strand 2	M	72	84	parallel
Strand 3	M	174	191	anti-parallel
Strand 4	M	247	262	anti-parallel
Strand 5	M	223	229	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	129	first strand
Strand 2	M	161	171	anti-parallel
Strand 3	M	97	111	anti-parallel
Strand 4	M	114	118	anti-parallel
Strand 5	M	146	150	anti-parallel
Strand 6	M	141	143	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	132	133	first strand
Strand 2	r	550	555	anti-parallel
Strand 3	r	558	563	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	233	236	first strand
Strand 2	M	243	245	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	15	19	anti-parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	103	118	anti-parallel
Strand 5	G	126	132	anti-parallel
Strand 6	G	58	66	anti-parallel
Strand 7	G	27	35	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	15	19	anti-parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	103	118	anti-parallel
Strand 5	G	135	137	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	51	53	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	177	178	first strand
Strand 2	S	168	174	anti-parallel
Strand 3	S	200	219	anti-parallel
Strand 4	S	241	246	anti-parallel
Strand 5	S	119	123	anti-parallel
Strand 6	S	94	101	anti-parallel
Strand 7	S	56	61	anti-parallel
Strand 8	S	135	151	anti-parallel
Strand 9	S	200	219	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	63	65	first strand
Strand 2	S	88	90	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	107	110	first strand
Strand 2	S	113	116	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	160	161	first strand
Strand 2	S	190	193	anti-parallel
Strand 3	S	184	187	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	223	226	first strand
Strand 2	S	234	237	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	106	first strand
Strand 2	b	192	203	anti-parallel
Strand 3	b	123	133	anti-parallel
Strand 4	b	136	140	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	116	117	first strand
Strand 2	b	154	157	anti-parallel
Strand 3	b	146	149	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	250	255	first strand
Strand 2	b	258	264	anti-parallel
Strand 3	c	248	255	anti-parallel
Strand 4	c	258	263	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	97	106	first strand
Strand 2	c	192	203	anti-parallel
Strand 3	c	123	133	anti-parallel
Strand 4	c	136	140	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	116	117	first strand
Strand 2	c	154	157	anti-parallel
Strand 3	c	146	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q01

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q01