Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q06 entry

There are 4 chains in PDB entry 8Q06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 302PRO 370
B
 MET 296PRO 370
C
 MET 1THR 77
D
 ALA 2VAL 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8Q06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
303 316Right-handed alpha
Helix 2
AA2
A
327 335Right-handed alpha
Helix 3
AA3
A
340 352Right-handed alpha
Helix 4
AA4
A
361 369Right-handed alpha
Helix 5
AA5
B
303 316Right-handed alpha
Helix 6
AA6
B
327 335Right-handed alpha
Helix 7
AA7
B
340 352Right-handed alpha
Helix 8
AA8
B
361 369Right-handed alpha
Helix 9
AA9
C
24 37Right-handed alpha
Helix 10
AB1
C
42 44Right-handed 310
Helix 11
AB2
C
60 65Right-handed 310
Helix 12
AB3
D
24 37Right-handed alpha
Helix 13
AB4
D
42 46Right-handed 310
Helix 14
AB5
D
60 65Right-handed 310
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There are 4 sheets in PDB entry 8Q06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
358 360anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
358 360anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 19first strand
Strand 2
C
3 9anti-parallel
Strand 3
C
72 76parallel
Strand 4
C
46 50anti-parallel
Strand 5
C
53 54anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 19first strand
Strand 2
D
3 8anti-parallel
Strand 3
D
72 75parallel
Strand 4
D
47 50anti-parallel
Strand 5
D
53 54anti-parallel
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