Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q0G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q0G entry

There are 7 chains in PDB entry 8Q0G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 26	GLY 807
B	LEU 22	THR 391
C	ARG 30	ASP 210
D	GLU 26	SER 243
E	GLU 24	ASN 113
F	VAL 25	SER 427
P	GLU 1002	PHE 1300

There are 45 helices in PDB entry 8Q0G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	67	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	128	Right-handed 310
Helix 5	AA5	A	129	145	Right-handed alpha
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	215	232	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	368	Right-handed alpha
Helix 11	AB2	A	380	393	Right-handed alpha
Helix 12	AB3	A	449	452	Right-handed 310
Helix 13	AB4	A	542	553	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	726	731	Right-handed 310
Helix 16	AB7	B	22	27	Right-handed 310
Helix 17	AB8	C	76	80	Right-handed 310
Helix 18	AB9	C	112	126	Right-handed alpha
Helix 19	AC1	C	191	210	Right-handed alpha
Helix 20	AC2	D	31	46	Right-handed alpha
Helix 21	AC3	D	48	62	Right-handed alpha
Helix 22	AC4	D	67	83	Right-handed alpha
Helix 23	AC5	D	84	99	Right-handed alpha
Helix 24	AC6	D	104	119	Right-handed alpha
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	160	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	208	225	Right-handed alpha
Helix 29	AD2	D	227	241	Right-handed alpha
Helix 30	AD3	E	39	45	Right-handed alpha
Helix 31	AD4	E	51	60	Right-handed alpha
Helix 32	AD5	F	39	56	Right-handed alpha
Helix 33	AD6	F	65	86	Right-handed alpha
Helix 34	AD7	F	93	105	Right-handed alpha
Helix 35	AD8	F	127	150	Right-handed alpha
Helix 36	AD9	F	154	159	Right-handed 310
Helix 37	AE1	F	190	209	Right-handed alpha
Helix 38	AE2	F	211	220	Right-handed alpha
Helix 39	AE3	F	222	228	Right-handed 310
Helix 40	AE4	F	243	249	Right-handed alpha
Helix 41	AE5	F	396	420	Right-handed alpha
Helix 42	AE6	P	1003	1022	Right-handed alpha
Helix 43	AE7	P	1136	1139	Right-handed 310
Helix 44	AE8	P	1185	1189	Right-handed 310
Helix 45	AE9	P	1282	1287	Right-handed alpha

There are 24 sheets in PDB entry 8Q0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	77	first strand
Strand 2	A	86	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	162	171	parallel
Strand 3	A	149	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	334	342	parallel
Strand 3	A	274	276	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 17 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	805	first strand
Strand 2	A	781	789	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	564	581	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	519	anti-parallel
Strand 12	A	484	494	anti-parallel
Strand 13	A	466	475	anti-parallel
Strand 14	A	455	462	anti-parallel
Strand 15	A	438	447	anti-parallel
Strand 16	A	426	432	anti-parallel
Strand 17	P	1295	1298	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	387	390	anti-parallel
Strand 3	B	378	381	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	268	271	anti-parallel
Strand 4	B	277	279	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	164	165	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	38	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	423	425	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	234	first strand
Strand 2	F	174	180	anti-parallel
Strand 3	F	266	270	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1040	1051	first strand
Strand 2	P	1057	1069	anti-parallel
Strand 3	P	1079	1092	anti-parallel
Strand 4	P	1096	1112	anti-parallel
Strand 5	P	1117	1134	anti-parallel
Strand 6	P	1140	1157	anti-parallel
Strand 7	P	1166	1179	anti-parallel
Strand 8	P	1198	1199	anti-parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1040	1051	first strand
Strand 2	P	1057	1069	anti-parallel
Strand 3	P	1079	1092	anti-parallel
Strand 4	P	1096	1112	anti-parallel
Strand 5	P	1117	1134	anti-parallel
Strand 6	P	1140	1157	anti-parallel
Strand 7	P	1166	1179	anti-parallel
Strand 8	P	1202	1211	anti-parallel
Strand 9	P	1224	1234	anti-parallel
Strand 10	P	1257	1258	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1194	1195	first strand
Strand 2	P	1239	1242	anti-parallel
Strand 3	P	1247	1250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q0G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q0G