Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q0P entry

There are 6 chains in PDB entry 8Q0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	ASP 294
B	THR 23	ILE 292
C	THR 22	ASP 294
D	THR 23	SER 293
E	THR 22	SER 293
F	THR 23	GLU 281

There are 29 helices in PDB entry 8Q0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	63	Right-handed alpha
Helix 2	AA2	A	95	131	Right-handed alpha
Helix 3	AA3	A	143	147	Right-handed alpha
Helix 4	AA4	A	219	223	Right-handed 310
Helix 5	AA5	A	268	293	Right-handed alpha
Helix 6	AA6	B	34	62	Right-handed alpha
Helix 7	AA7	B	95	106	Right-handed alpha
Helix 8	AA8	B	106	131	Right-handed alpha
Helix 9	AA9	B	219	223	Right-handed 310
Helix 10	AB1	B	268	292	Right-handed alpha
Helix 11	AB2	C	34	64	Right-handed alpha
Helix 12	AB3	C	95	131	Right-handed alpha
Helix 13	AB4	C	144	146	Right-handed 310
Helix 14	AB5	C	219	223	Right-handed 310
Helix 15	AB6	C	268	293	Right-handed alpha
Helix 16	AB7	D	34	63	Right-handed alpha
Helix 17	AB8	D	95	131	Right-handed alpha
Helix 18	AB9	D	143	147	Right-handed alpha
Helix 19	AC1	D	219	223	Right-handed 310
Helix 20	AC2	D	268	292	Right-handed alpha
Helix 21	AC3	E	34	66	Right-handed alpha
Helix 22	AC4	E	95	131	Right-handed alpha
Helix 23	AC5	E	219	223	Right-handed 310
Helix 24	AC6	E	268	291	Right-handed alpha
Helix 25	AC7	F	34	63	Right-handed alpha
Helix 26	AC8	F	95	131	Right-handed alpha
Helix 27	AC9	F	144	146	Right-handed 310
Helix 28	AD1	F	219	223	Right-handed 310
Helix 29	AD2	F	268	293	Right-handed alpha

There are 24 sheets in PDB entry 8Q0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	134	135	anti-parallel
Strand 3	A	236	237	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	230	234	anti-parallel
Strand 3	A	209	213	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	197	first strand
Strand 2	A	239	247	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	255	256	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	134	135	anti-parallel
Strand 3	B	236	237	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	B	209	213	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	197	first strand
Strand 2	B	239	247	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	254	256	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	134	135	anti-parallel
Strand 3	C	236	237	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	230	234	anti-parallel
Strand 3	C	209	213	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	197	first strand
Strand 2	C	239	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	254	256	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	134	135	anti-parallel
Strand 3	D	236	237	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	142	first strand
Strand 2	D	230	234	anti-parallel
Strand 3	D	209	213	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	197	first strand
Strand 2	D	239	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	255	256	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	134	135	anti-parallel
Strand 3	E	236	237	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	230	234	anti-parallel
Strand 3	E	209	213	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	197	first strand
Strand 2	E	239	247	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	251	first strand
Strand 2	E	254	256	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	134	135	anti-parallel
Strand 3	F	236	237	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	142	first strand
Strand 2	F	230	234	anti-parallel
Strand 3	F	209	213	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	197	first strand
Strand 2	F	239	247	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	251	first strand
Strand 2	F	254	256	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q0P