Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q15 entry

There are 10 chains in PDB entry 8Q15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20THR 103
B
 SER 20THR 103
C
 THR 65SER 152
D
 THR 65SER 152
E
 ILE 63ARG 135
F
 LYS 38GLU 134
G
 ASP 25GLY 103
H
 ASN 26GLY 103
I
 T -46 A 72
J
 T -72 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8Q15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
48 75Right-handed alpha
Helix 3
AA3
A
81 92Right-handed alpha
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
B
28 39Right-handed alpha
Helix 6
AA6
B
47 75Right-handed alpha
Helix 7
AA7
B
81 92Right-handed alpha
Helix 8
AA8
B
92 99Right-handed alpha
Helix 9
AA9
C
66 78Right-handed alpha
Helix 10
AB1
C
84 114Right-handed alpha
Helix 11
AB2
C
119 131Right-handed alpha
Helix 12
AB3
C
132 152Right-handed alpha
Helix 13
AB4
D
66 78Right-handed alpha
Helix 14
AB5
D
84 114Right-handed alpha
Helix 15
AB6
D
119 131Right-handed alpha
Helix 16
AB7
D
133 152Right-handed alpha
Helix 17
AB8
E
64 80Right-handed alpha
Helix 18
AB9
E
86 115Right-handed alpha
Helix 19
AC1
E
121 133Right-handed alpha
Helix 20
AC2
F
45 58Right-handed alpha
Helix 21
AC3
F
64 80Right-handed alpha
Helix 22
AC4
F
86 115Right-handed alpha
Helix 23
AC5
F
121 133Right-handed alpha
Helix 24
AC6
G
26 30Right-handed 310
Helix 25
AC7
G
31 42Right-handed alpha
Helix 26
AC8
G
50 77Right-handed alpha
Helix 27
AC9
G
83 94Right-handed alpha
Helix 28
AD1
H
26 30Right-handed 310
Helix 29
AD2
H
31 43Right-handed alpha
Helix 30
AD3
H
50 77Right-handed alpha
Helix 31
AD4
H
83 94Right-handed alpha
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There are 8 sheets in PDB entry 8Q15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
C
117 118parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
C
82 83parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
D
117 118parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
D
82 83parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 85first strand
Strand 2
G
81 82parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 120first strand
Strand 2
G
46 47parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 85first strand
Strand 2
H
81 82parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 120first strand
Strand 2
H
46 47parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il