Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q1D entry

There is 1 chain in PDB entry 8Q1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8Q1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
39 44Right-handed 310
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
65 84Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
95 106Right-handed alpha
Helix 7
AA7
A
118 126Right-handed alpha
Helix 8
AA8
A
128 132Right-handed 310
Helix 9
AA9
A
137 141Right-handed 310
Helix 10
AB1
A
148 158Right-handed alpha
Helix 11
AB2
A
161 163Right-handed 310
Helix 12
AB3
A
171 182Right-handed alpha
Helix 13
AB4
A
190 194Right-handed 310
Helix 14
AB5
A
203 207Right-handed 310
Helix 15
AB6
A
208 219Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8Q1D.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
109 112parallel
Strand 3
A
4 7parallel
Strand 4
A
165 169parallel
Strand 5
A
184 188parallel
Strand 6
A
199 201parallel
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