Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q1O entry

There are 2 chains in PDB entry 8Q1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 32THR 209
B
 ASP 32THR 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8Q1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 158Right-handed 310
Helix 2
AA2
B
154 158Right-handed 310
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There are 6 sheets in PDB entry 8Q1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
74 92anti-parallel
Strand 3
A
51 69anti-parallel
Strand 4
A
163 167parallel
Strand 5
A
182 185anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
74 92anti-parallel
Strand 3
A
51 69anti-parallel
Strand 4
A
206 207parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
197 203anti-parallel
Strand 5
A
172 175anti-parallel
Strand 6
A
178 180anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
75 92anti-parallel
Strand 3
B
51 68anti-parallel
Strand 4
B
163 167parallel
Strand 5
B
182 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
75 92anti-parallel
Strand 3
B
51 68anti-parallel
Strand 4
B
206 207parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
197 203anti-parallel
Strand 5
B
172 175anti-parallel
Strand 6
B
178 180anti-parallel
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