Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q21


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q21 entry

There is 1 chain in PDB entry 8Q21 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8Q21. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 21Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
67 81Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
140 146Right-handed 310
Helix 7
AA7
A
167 183Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
211 222Right-handed alpha
Helix 10
AB1
A
238 245Right-handed alpha
Helix 11
AB2
A
269 273Right-handed 310
Helix 12
AB3
A
285 288Right-handed 310
Helix 13
AB4
A
314 323Right-handed alpha
Helix 14
AB5
A
352 362Right-handed alpha
Helix 15
AB6
A
366 380Right-handed alpha
Helix 16
AB7
A
392 397Right-handed alpha
Helix 17
AB8
A
405 430Right-handed alpha
Helix 18
AB9
A
436 449Right-handed alpha
Helix 19
AC1
A
457 470Right-handed alpha
Helix 20
AC2
A
472 484Right-handed alpha
Helix 21
AC3
A
486 491Right-handed alpha
Helix 22
AC4
A
492 496Right-handed 310
Helix 23
AC5
A
518 535Right-handed alpha
Helix 24
AC6
A
572 592Right-handed alpha
Helix 25
AC7
A
595 618Right-handed alpha
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There are 6 sheets in PDB entry 8Q21. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
43 46anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
296 299anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
347 348anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
549 555anti-parallel
Strand 3
A
562 567anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 630first strand
Strand 2
A
636 638anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il