Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q29 entry

There are 2 chains in PDB entry 8Q29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3HIS 244
B
 SER 3HIS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8Q29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
139 143Right-handed 310
Helix 2
AA2
A
185 189Right-handed 310
Helix 3
AA3
A
193 197Right-handed 310
Helix 4
AA4
A
237 242Right-handed alpha
Helix 5
AA5
B
139 143Right-handed 310
Helix 6
AA6
B
185 189Right-handed 310
Helix 7
AA7
B
192 197Right-handed alpha
Helix 8
AA8
B
237 243Right-handed alpha
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There are 6 sheets in PDB entry 8Q29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
43 47anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
79 88anti-parallel
Strand 4
A
154 162anti-parallel
Strand 5
A
170 175anti-parallel
Strand 6
A
178 183anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
24 27anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
207 214anti-parallel
Strand 5
A
100 107anti-parallel
Strand 6
A
116 122anti-parallel
Strand 7
A
125 131anti-parallel
Strand 8
A
136 137anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
220 230anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
43 47anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
220 230anti-parallel
Strand 3
B
79 88anti-parallel
Strand 4
B
155 162anti-parallel
Strand 5
B
170 175anti-parallel
Strand 6
B
178 183anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
24 27anti-parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
207 214anti-parallel
Strand 5
B
100 107anti-parallel
Strand 6
B
116 122anti-parallel
Strand 7
B
125 131anti-parallel
Strand 8
B
136 137anti-parallel
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