Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q2C entry

There are 2 chains in PDB entry 8Q2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 23PRO 187
A
 LYS 23PRO 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8Q2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
54 59Right-handed alpha
Helix 2
AA2
B
82 99Right-handed alpha
Helix 3
AA3
B
160 185Right-handed alpha
Helix 4
AA4
A
39 43Right-handed 310
Helix 5
AA5
A
82 99Right-handed alpha
Helix 6
AA6
A
160 186Right-handed alpha
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There are 4 sheets in PDB entry 8Q2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
45 48parallel
Strand 3
B
114 126parallel
Strand 4
B
130 141anti-parallel
Strand 5
B
144 155anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
45 48parallel
Strand 3
B
114 126parallel
Strand 4
B
61 65parallel
Strand 5
B
71 79anti-parallel
Strand 6
B
24 26parallel
Strand 7
A
70 71anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
73 79parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
114 126parallel
Strand 5
A
45 48parallel
Strand 6
A
103 105parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
73 79parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
114 126parallel
Strand 5
A
130 141anti-parallel
Strand 6
A
144 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il