Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q2H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q2H entry

There is 1 chain in PDB entry 8Q2H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	PRO 1244

There are 20 helices in PDB entry 8Q2H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	89	Right-handed alpha
Helix 2	AA2	A	118	122	Right-handed 310
Helix 3	AA3	A	217	223	Right-handed alpha
Helix 4	AA4	A	348	352	Right-handed 310
Helix 5	AA5	A	356	370	Right-handed alpha
Helix 6	AA6	A	383	394	Right-handed alpha
Helix 7	AA7	A	413	416	Right-handed 310
Helix 8	AA8	A	417	434	Right-handed alpha
Helix 9	AA9	A	448	452	Right-handed 310
Helix 10	AB1	A	453	469	Right-handed alpha
Helix 11	AB2	A	494	504	Right-handed alpha
Helix 12	AB3	A	512	516	Right-handed 310
Helix 13	AB4	A	517	523	Right-handed alpha
Helix 14	AB5	A	573	583	Right-handed alpha
Helix 15	AB6	A	626	637	Right-handed alpha
Helix 16	AB7	A	848	852	Right-handed 310
Helix 17	AB8	A	897	902	Right-handed alpha
Helix 18	AB9	A	971	977	Right-handed alpha
Helix 19	AC1	A	1027	1037	Right-handed 310
Helix 20	AC2	A	1204	1206	Right-handed 310

There are 21 sheets in PDB entry 8Q2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	156	159	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	107	115	anti-parallel
Strand 4	A	171	179	anti-parallel
Strand 5	A	137	141	anti-parallel
Strand 6	A	144	149	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	214	first strand
Strand 2	A	226	237	anti-parallel
Strand 3	A	273	276	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	214	first strand
Strand 2	A	226	237	anti-parallel
Strand 3	A	279	284	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	243	252	anti-parallel
Strand 3	A	267	269	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	243	252	anti-parallel
Strand 3	A	298	304	anti-parallel
Strand 4	A	309	315	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	329	332	anti-parallel
Strand 3	A	335	336	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	374	376	parallel
Strand 3	A	396	400	parallel
Strand 4	A	439	446	parallel
Strand 5	A	476	480	parallel
Strand 6	A	506	510	parallel
Strand 7	A	528	533	parallel
Strand 8	A	589	593	parallel
Strand 9	A	339	343	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	566	567	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	655	662	anti-parallel
Strand 3	A	702	707	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	680	first strand
Strand 2	A	666	671	anti-parallel
Strand 3	A	712	718	anti-parallel
Strand 4	A	724	731	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	685	first strand
Strand 2	A	691	694	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	743	first strand
Strand 2	A	755	764	anti-parallel
Strand 3	A	813	819	anti-parallel
Strand 4	A	785	791	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	838	845	parallel
Strand 3	A	824	832	anti-parallel
Strand 4	A	776	783	anti-parallel
Strand 5	A	805	807	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	858	first strand
Strand 2	A	876	881	anti-parallel
Strand 3	A	888	893	anti-parallel
Strand 4	A	905	913	anti-parallel
Strand 5	A	919	926	anti-parallel
Strand 6	A	861	865	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	954	first strand
Strand 2	A	960	967	anti-parallel
Strand 3	A	980	987	anti-parallel
Strand 4	A	994	999	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1023	first strand
Strand 2	A	1062	1067	anti-parallel
Strand 3	A	1131	1138	anti-parallel
Strand 4	A	1090	1098	anti-parallel
Strand 5	A	1103	1105	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1050	1051	first strand
Strand 2	A	1144	1151	anti-parallel
Strand 3	A	1087	1088	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1050	1051	first strand
Strand 2	A	1144	1151	anti-parallel
Strand 3	A	1077	1081	anti-parallel
Strand 4	A	1119	1122	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1173	1174	first strand
Strand 2	A	1165	1170	anti-parallel
Strand 3	A	1198	1202	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1184	1189	first strand
Strand 2	A	1232	1241	parallel
Strand 3	A	1220	1225	anti-parallel
Strand 4	A	1208	1209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q2H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q2H