Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q3B entry

There are 8 chains in PDB entry 8Q3B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1445
B	ILE 8	ALA 1242
C	MET 1	ALA 359
D	MET 1	GLY 336
E	MET 1	ILE 205
F	LYS 36	ASP 147
I	MET 1	GLY 105
J	MET 1	TYR 80

There are147 helices in PDB entry 8Q3B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	87	96	Right-handed alpha
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	116	118	Right-handed 310
Helix 6	AA6	A	119	127	Right-handed alpha
Helix 7	AA7	A	166	176	Right-handed alpha
Helix 8	AA8	A	178	185	Right-handed alpha
Helix 9	AA9	A	188	195	Right-handed 310
Helix 10	AB1	A	205	209	Right-handed 310
Helix 11	AB2	A	225	240	Right-handed alpha
Helix 12	AB3	A	253	273	Right-handed alpha
Helix 13	AB4	A	308	313	Right-handed alpha
Helix 14	AB5	A	342	348	Right-handed alpha
Helix 15	AB6	A	358	369	Right-handed alpha
Helix 16	AB7	A	450	455	Right-handed alpha
Helix 17	AB8	A	470	480	Right-handed alpha
Helix 18	AB9	A	482	487	Right-handed 310
Helix 19	AC1	A	501	512	Right-handed alpha
Helix 20	AC2	A	523	531	Right-handed alpha
Helix 21	AC3	A	552	562	Right-handed alpha
Helix 22	AC4	A	578	582	Right-handed 310
Helix 23	AC5	A	604	609	Right-handed alpha
Helix 24	AC6	A	615	625	Right-handed alpha
Helix 25	AC7	A	625	647	Right-handed alpha
Helix 26	AC8	A	653	657	Right-handed 310
Helix 27	AC9	A	659	687	Right-handed alpha
Helix 28	AD1	A	696	709	Right-handed alpha
Helix 29	AD2	A	712	714	Right-handed 310
Helix 30	AD3	A	715	723	Right-handed alpha
Helix 31	AD4	A	728	736	Right-handed alpha
Helix 32	AD5	A	741	749	Right-handed alpha
Helix 33	AD6	A	781	785	Right-handed 310
Helix 34	AD7	A	797	834	Right-handed alpha
Helix 35	AD8	A	854	858	Right-handed 310
Helix 36	AD9	A	876	885	Right-handed alpha
Helix 37	AE1	A	891	918	Right-handed alpha
Helix 38	AE2	A	933	945	Right-handed alpha
Helix 39	AE3	A	953	971	Right-handed alpha
Helix 40	AE4	A	972	975	Right-handed 310
Helix 41	AE5	A	977	984	Right-handed alpha
Helix 42	AE6	A	988	1006	Right-handed alpha
Helix 43	AE7	A	1015	1033	Right-handed alpha
Helix 44	AE8	A	1040	1051	Right-handed alpha
Helix 45	AE9	A	1052	1062	Right-handed alpha
Helix 46	AF1	A	1074	1083	Right-handed alpha
Helix 47	AF2	A	1102	1105	Right-handed 310
Helix 48	AF3	A	1106	1118	Right-handed alpha
Helix 49	AF4	A	1148	1150	Right-handed 310
Helix 50	AF5	A	1151	1162	Right-handed alpha
Helix 51	AF6	A	1181	1189	Right-handed alpha
Helix 52	AF7	A	1191	1203	Right-handed alpha
Helix 53	AF8	A	1230	1233	Right-handed 310
Helix 54	AF9	A	1242	1256	Right-handed alpha
Helix 55	AG1	A	1299	1306	Right-handed alpha
Helix 56	AG2	A	1310	1314	Right-handed 310
Helix 57	AG3	A	1318	1326	Right-handed alpha
Helix 58	AG4	A	1327	1344	Right-handed alpha
Helix 59	AG5	A	1349	1361	Right-handed alpha
Helix 60	AG6	A	1370	1378	Right-handed alpha
Helix 61	AG7	A	1381	1389	Right-handed alpha
Helix 62	AG8	A	1390	1402	Right-handed alpha
Helix 63	AG9	A	1410	1416	Right-handed alpha
Helix 64	AH1	A	1422	1426	Right-handed 310
Helix 65	AH2	A	1432	1440	Right-handed alpha
Helix 66	AH3	B	12	16	Right-handed 310
Helix 67	AH4	B	22	38	Right-handed alpha
Helix 68	AH5	B	42	53	Right-handed alpha
Helix 69	AH6	B	53	62	Right-handed alpha
Helix 70	AH7	B	113	121	Right-handed alpha
Helix 71	AH8	B	175	183	Right-handed alpha
Helix 72	AH9	B	272	280	Right-handed alpha
Helix 73	AI1	B	283	293	Right-handed alpha
Helix 74	AI2	B	299	315	Right-handed alpha
Helix 75	AI3	B	320	325	Right-handed alpha
Helix 76	AI4	B	328	342	Right-handed alpha
Helix 77	AI5	B	353	372	Right-handed alpha
Helix 78	AI6	B	379	381	Right-handed 310
Helix 79	AI7	B	382	402	Right-handed alpha
Helix 80	AI8	B	420	450	Right-handed alpha
Helix 81	AI9	B	476	488	Right-handed alpha
Helix 82	AJ1	B	514	522	Right-handed alpha
Helix 83	AJ2	B	526	532	Right-handed alpha
Helix 84	AJ3	B	535	542	Right-handed alpha
Helix 85	AJ4	B	582	593	Right-handed alpha
Helix 86	AJ5	B	603	611	Right-handed alpha
Helix 87	AJ6	B	627	642	Right-handed alpha
Helix 88	AJ7	B	679	697	Right-handed alpha
Helix 89	AJ8	B	700	705	Right-handed alpha
Helix 90	AJ9	B	715	724	Right-handed alpha
Helix 91	AK1	B	728	735	Right-handed alpha
Helix 92	AK2	B	744	749	Right-handed 310
Helix 93	AK3	B	754	761	Right-handed alpha
Helix 94	AK4	B	774	779	Right-handed 310
Helix 95	AK5	B	780	786	Right-handed alpha
Helix 96	AK6	B	788	792	Right-handed 310
Helix 97	AK7	B	793	800	Right-handed alpha
Helix 98	AK8	B	836	841	Right-handed 310
Helix 99	AK9	B	869	874	Right-handed alpha
Helix 100	AL1	B	1011	1015	Right-handed 310
Helix 101	AL2	B	1031	1037	Right-handed alpha
Helix 102	AL3	B	1038	1055	Right-handed alpha
Helix 103	AL4	B	1067	1078	Right-handed alpha
Helix 104	AL5	B	1114	1119	Right-handed alpha
Helix 105	AL6	B	1148	1159	Right-handed alpha
Helix 106	AL7	B	1160	1169	Right-handed alpha
Helix 107	AL8	B	1213	1226	Right-handed alpha
Helix 108	AL9	C	19	31	Right-handed alpha
Helix 109	AM1	C	51	64	Right-handed alpha
Helix 110	AM2	C	89	99	Right-handed alpha
Helix 111	AM3	C	128	130	Right-handed 310
Helix 112	AM4	C	173	177	Right-handed 310
Helix 113	AM5	C	230	259	Right-handed alpha
Helix 114	AM6	C	287	302	Right-handed alpha
Helix 115	AM7	C	328	359	Right-handed alpha
Helix 116	AM8	D	15	20	Right-handed alpha
Helix 117	AM9	D	22	36	Right-handed alpha
Helix 118	AN1	D	118	124	Right-handed alpha
Helix 119	AN2	D	174	195	Right-handed alpha
Helix 120	AN3	D	196	208	Right-handed alpha
Helix 121	AN4	D	239	245	Right-handed alpha
Helix 122	AN5	D	246	248	Right-handed 310
Helix 123	AN6	D	288	314	Right-handed alpha
Helix 124	AN7	D	316	334	Right-handed alpha
Helix 125	AN8	E	2	17	Right-handed alpha
Helix 126	AN9	E	27	39	Right-handed alpha
Helix 127	AO1	E	67	81	Right-handed alpha
Helix 128	AO2	E	93	98	Right-handed alpha
Helix 129	AO3	E	99	113	Right-handed alpha
Helix 130	AO4	E	123	127	Right-handed 310
Helix 131	AO5	E	129	133	Right-handed 310
Helix 132	AO6	E	143	155	Right-handed alpha
Helix 133	AO7	E	157	161	Right-handed 310
Helix 134	AO8	E	168	175	Right-handed alpha
Helix 135	AO9	F	44	49	Right-handed alpha
Helix 136	AP1	F	61	65	Right-handed 310
Helix 137	AP2	F	72	90	Right-handed alpha
Helix 138	AP3	F	101	112	Right-handed alpha
Helix 139	AP4	F	137	141	Right-handed 310
Helix 140	AP5	I	33	37	Right-handed 310
Helix 141	AP6	I	49	60	Right-handed alpha
Helix 142	AP7	I	61	63	Right-handed 310
Helix 143	AP8	J	14	33	Right-handed alpha
Helix 144	AP9	J	42	47	Right-handed alpha
Helix 145	AQ1	J	51	59	Right-handed alpha
Helix 146	AQ2	J	63	73	Right-handed alpha
Helix 147	AQ3	J	75	80	Right-handed alpha

There are 45 sheets in PDB entry 8Q3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	B	1207	1212	parallel
Strand 3	B	1175	1180	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1404	1406	first strand
Strand 2	A	8	15	anti-parallel
Strand 3	B	1228	1234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	83	first strand
Strand 2	A	197	203	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	154	158	anti-parallel
Strand 3	A	161	164	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	B	1145	1147	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	A	322	329	anti-parallel
Strand 3	A	462	466	anti-parallel
Strand 4	A	414	418	anti-parallel
Strand 5	A	428	436	anti-parallel
Strand 6	A	337	341	parallel
Strand 7	A	444	446	anti-parallel
Strand 8	A	322	329	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	404	408	anti-parallel
Strand 3	A	376	381	anti-parallel
Strand 4	A	386	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	550	551	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	569	first strand
Strand 2	A	591	594	anti-parallel
Strand 3	A	597	600	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	754	first strand
Strand 2	A	787	788	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	838	first strand
Strand 2	A	844	846	anti-parallel
Strand 3	A	849	852	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	866	869	first strand
Strand 2	A	927	930	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1268	1278	first strand
Strand 2	A	1284	1295	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1315	1316	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1121	first strand
Strand 2	A	1258	1260	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1210	first strand
Strand 2	A	1222	1228	anti-parallel
Strand 3	A	1171	1180	anti-parallel
Strand 4	A	1126	1131	anti-parallel
Strand 5	I	40	43	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1428	1431	first strand
Strand 2	F	117	126	anti-parallel
Strand 3	F	130	136	anti-parallel
Strand 4	F	55	59	parallel
Strand 5	B	1238	1239	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	136	139	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	125	133	anti-parallel
Strand 3	B	151	161	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	198	200	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	419	first strand
Strand 2	B	204	208	anti-parallel
Strand 3	B	523	525	parallel
Strand 4	B	569	570	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	226	234	anti-parallel
Strand 3	B	244	251	anti-parallel
Strand 4	B	256	259	anti-parallel
Strand 5	B	270	271	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	578	first strand
Strand 2	B	668	678	anti-parallel
Strand 3	B	738	741	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	712	first strand
Strand 2	B	668	678	anti-parallel
Strand 3	B	771	772	anti-parallel
Strand 4	B	751	752	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	598	first strand
Strand 2	B	620	625	anti-parallel
Strand 3	B	613	617	anti-parallel
Strand 4	B	660	663	parallel
Strand 5	B	650	653	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	826	first strand
Strand 2	B	879	885	anti-parallel
Strand 3	B	982	988	anti-parallel
Strand 4	B	963	967	anti-parallel
Strand 5	B	926	927	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	835	first strand
Strand 2	B	1058	1059	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1085	1086	first strand
Strand 2	B	1101	1110	anti-parallel
Strand 3	B	995	998	anti-parallel
Strand 4	B	1004	1010	anti-parallel
Strand 5	B	864	868	parallel
Strand 6	B	1026	1028	anti-parallel
Strand 7	B	847	853	parallel
Strand 8	B	1101	1110	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	932	935	first strand
Strand 2	B	954	956	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1018	first strand
Strand 2	B	1088	1089	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1188	1190	first strand
Strand 2	B	1195	1197	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	12	first strand
Strand 2	C	38	48	anti-parallel
Strand 3	C	216	227	anti-parallel
Strand 4	C	180	186	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	157	168	anti-parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	131	134	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	148	152	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	277	284	anti-parallel
Strand 3	C	318	325	anti-parallel
Strand 4	C	307	312	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	13	first strand
Strand 2	D	68	79	anti-parallel
Strand 3	D	43	54	anti-parallel
Strand 4	D	39	40	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	13	first strand
Strand 2	D	68	79	anti-parallel
Strand 3	D	58	59	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	132	134	anti-parallel
Strand 3	D	148	154	anti-parallel
Strand 4	D	110	115	parallel
Strand 5	D	99	104	anti-parallel
Strand 6	D	90	92	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	285	287	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	224	226	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	269	273	anti-parallel
Strand 3	D	256	258	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	40	46	anti-parallel
Strand 3	E	52	58	anti-parallel
Strand 4	E	85	91	parallel
Strand 5	E	117	121	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	181	187	anti-parallel
Strand 3	E	193	201	anti-parallel
Strand 4	E	162	165	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	21	24	anti-parallel
Strand 3	I	27	31	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	69	first strand
Strand 2	I	81	86	anti-parallel
Strand 3	I	91	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q3B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3B