Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q3H entry

There are 2 chains in PDB entry 8Q3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 135
B
 MET 1ALA 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8Q3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 69Right-handed alpha
Helix 2
AA2
A
72 74Right-handed 310
Helix 3
AA3
A
85 87Right-handed 310
Helix 4
AA4
A
88 98Right-handed alpha
Helix 5
AA5
A
115 119Right-handed 310
Helix 6
AA6
B
50 69Right-handed alpha
Helix 7
AA7
B
72 74Right-handed 310
Helix 8
AA8
B
85 87Right-handed 310
Helix 9
AA9
B
88 97Right-handed alpha
Helix 10
AB1
B
98 100Right-handed 310
Helix 11
AB2
B
115 119Right-handed 310
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There are 2 sheets in PDB entry 8Q3H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
24 27anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
121 128anti-parallel
Strand 5
A
76 83anti-parallel
Strand 6
A
106 111parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
24 27anti-parallel
Strand 3
B
30 37anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
76 83anti-parallel
Strand 6
B
106 111parallel
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