Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q3R entry

There are 3 chains in PDB entry 8Q3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1TYR 218
A
 THR 2GLU 426
E
 GLY -3SER 829
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8Q3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
16 21Right-handed 310
Helix 2
AA2
D
22 39Right-handed alpha
Helix 3
AA3
D
45 49Right-handed 310
Helix 4
AA4
D
86 101Right-handed alpha
Helix 5
AA5
D
110 113Right-handed 310
Helix 6
AA6
D
133 150Right-handed alpha
Helix 7
AA7
D
165 170Right-handed alpha
Helix 8
AA8
D
184 188Right-handed 310
Helix 9
AA9
D
193 205Right-handed alpha
Helix 10
AB1
D
211 214Right-handed 310
Helix 11
AB2
A
3 19Right-handed alpha
Helix 12
AB3
A
24 42Right-handed alpha
Helix 13
AB4
A
57 61Right-handed 310
Helix 14
AB5
A
107 120Right-handed alpha
Helix 15
AB6
A
149 159Right-handed alpha
Helix 16
AB7
A
177 189Right-handed alpha
Helix 17
AB8
A
249 257Right-handed alpha
Helix 18
AB9
A
286 298Right-handed alpha
Helix 19
AC1
A
315 324Right-handed alpha
Helix 20
AC2
A
332 341Right-handed alpha
Helix 21
AC3
A
343 351Right-handed alpha
Helix 22
AC4
A
352 361Right-handed alpha
Helix 23
AC5
A
364 373Right-handed alpha
Helix 24
AC6
A
393 396Right-handed 310
Helix 25
AC7
A
397 406Right-handed alpha
Helix 26
AC8
A
406 426Right-handed alpha
Helix 27
AC9
E
44 50Right-handed alpha
Helix 28
AD1
E
108 118Right-handed alpha
Helix 29
AD2
E
144 149Right-handed alpha
Helix 30
AD3
E
209 219Right-handed alpha
Helix 31
AD4
E
240 253Right-handed alpha
Helix 32
AD5
E
267 280Right-handed alpha
Helix 33
AD6
E
331 339Right-handed alpha
Helix 34
AD7
E
345 352Right-handed alpha
Helix 35
AD8
E
380 388Right-handed alpha
Helix 36
AD9
E
439 446Right-handed alpha
Helix 37
AE1
E
448 473Right-handed alpha
Helix 38
AE2
E
474 487Right-handed alpha
Helix 39
AE3
E
489 493Right-handed 310
Helix 40
AE4
E
497 502Right-handed alpha
Helix 41
AE5
E
502 514Right-handed alpha
Helix 42
AE6
E
552 561Right-handed alpha
Helix 43
AE7
E
576 591Right-handed alpha
Helix 44
AE8
E
622 641Right-handed alpha
Helix 45
AE9
E
648 666Right-handed alpha
Helix 46
AF1
E
666 673Right-handed alpha
Helix 47
AF2
E
680 703Right-handed alpha
Helix 48
AF3
E
763 781Right-handed alpha
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There are 20 sheets in PDB entry 8Q3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
13 15anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 120first strand
Strand 2
D
60 66parallel
Strand 3
D
154 158parallel
Strand 4
D
175 179parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 108first strand
Strand 2
D
216 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
174 176anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
208 210anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
135 142anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
273 275anti-parallel
Strand 4
A
245 246parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 229first strand
Strand 2
A
232 237anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
307 309anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
383 389anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 10first strand
Strand 2
E
17 24anti-parallel
Strand 3
E
29 35anti-parallel
Strand 4
E
139 141parallel
Strand 5
E
133 134anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 43first strand
Strand 2
E
83 93anti-parallel
Strand 3
E
56 67anti-parallel
Strand 4
E
516 518parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 73first strand
Strand 2
E
568 574parallel
Strand 3
E
610 616anti-parallel
Strand 4
E
596 600anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 126first strand
Strand 2
E
151 153anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
183 188first strand
Strand 2
E
162 169anti-parallel
Strand 3
E
258 260parallel
Strand 4
E
327 328parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
203 204first strand
Strand 2
E
237 239parallel
Strand 3
E
222 223parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
299 304first strand
Strand 2
E
315 320anti-parallel
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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
355 360first strand
Strand 2
E
368 373anti-parallel
Strand 3
E
414 419anti-parallel
Strand 4
E
401 410anti-parallel
Strand 5
E
394 397anti-parallel
Strand 6
E
428 432anti-parallel
Strand 7
E
355 360anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
745 750first strand
Strand 2
E
755 759anti-parallel
Strand 3
E
544 548anti-parallel
Strand 4
E
791 800anti-parallel
Strand 5
E
806 811anti-parallel
Strand 6
E
822 826anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
706 708first strand
Strand 2
E
711 713anti-parallel
Strand 3
E
732 734anti-parallel
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