Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q3V entry

There are 21 chains in PDB entry 8Q3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 178	VAL 238
B	GLU 31	LEU 100
C	ALA 11	GLU 264
D	MET 1	PHE 233
E	MET 1	GLU 294
F	ILE 2	ILE 68
G	THR 8	LYS 81
a	GLU 178	VAL 238
b	GLU 31	LEU 100
c	ALA 12	GLU 264
d	MET 1	PHE 233
e	MET 1	GLU 294
f	ILE 2	ILE 68
g	THR 8	LEU 83
Q	GLU 178	VAL 238
R	GLU 31	LEU 100
S	ALA 11	GLU 264
T	MET 1	PHE 233
U	MET 1	GLU 294
V	ILE 2	ILE 68
W	THR 8	SER 82

There are113 helices in PDB entry 8Q3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	184	238	Right-handed alpha
Helix 2	AA2	B	37	56	Right-handed alpha
Helix 3	AA3	B	73	100	Right-handed alpha
Helix 4	AA4	C	14	32	Right-handed alpha
Helix 5	AA5	C	39	64	Right-handed alpha
Helix 6	AA6	C	69	91	Right-handed alpha
Helix 7	AA7	C	92	95	Right-handed 310
Helix 8	AA8	C	100	123	Right-handed alpha
Helix 9	AA9	C	130	155	Right-handed alpha
Helix 10	AB1	C	158	166	Right-handed alpha
Helix 11	AB2	C	170	191	Right-handed alpha
Helix 12	AB3	C	196	218	Right-handed alpha
Helix 13	AB4	C	225	252	Right-handed alpha
Helix 14	AB5	D	2	22	Right-handed alpha
Helix 15	AB6	D	28	32	Right-handed 310
Helix 16	AB7	D	42	60	Right-handed alpha
Helix 17	AB8	D	65	95	Right-handed alpha
Helix 18	AB9	D	115	119	Right-handed 310
Helix 19	AC1	D	129	159	Right-handed alpha
Helix 20	AC2	D	163	191	Right-handed alpha
Helix 21	AC3	D	200	204	Right-handed 310
Helix 22	AC4	D	205	225	Right-handed alpha
Helix 23	AC5	D	225	230	Right-handed alpha
Helix 24	AC6	E	2	32	Right-handed alpha
Helix 25	AC7	E	37	44	Right-handed alpha
Helix 26	AC8	E	60	83	Right-handed alpha
Helix 27	AC9	E	86	116	Right-handed alpha
Helix 28	AD1	E	117	121	Right-handed 310
Helix 29	AD2	E	126	155	Right-handed alpha
Helix 30	AD3	E	166	183	Right-handed alpha
Helix 31	AD4	E	185	193	Right-handed alpha
Helix 32	AD5	E	206	210	Right-handed 310
Helix 33	AD6	E	223	232	Right-handed alpha
Helix 34	AD7	E	234	289	Right-handed alpha
Helix 35	AD8	F	10	40	Right-handed alpha
Helix 36	AD9	F	40	65	Right-handed alpha
Helix 37	AE1	G	15	68	Right-handed alpha
Helix 38	AE2	G	72	81	Right-handed alpha
Helix 39	AE3	a	184	238	Right-handed alpha
Helix 40	AE4	b	37	56	Right-handed alpha
Helix 41	AE5	b	73	100	Right-handed alpha
Helix 42	AE6	c	14	32	Right-handed alpha
Helix 43	AE7	c	39	65	Right-handed alpha
Helix 44	AE8	c	70	91	Right-handed alpha
Helix 45	AE9	c	92	95	Right-handed 310
Helix 46	AF1	c	100	123	Right-handed alpha
Helix 47	AF2	c	130	155	Right-handed alpha
Helix 48	AF3	c	158	166	Right-handed alpha
Helix 49	AF4	c	170	191	Right-handed alpha
Helix 50	AF5	c	196	218	Right-handed alpha
Helix 51	AF6	c	225	252	Right-handed alpha
Helix 52	AF7	d	2	22	Right-handed alpha
Helix 53	AF8	d	28	32	Right-handed 310
Helix 54	AF9	d	42	60	Right-handed alpha
Helix 55	AG1	d	65	95	Right-handed alpha
Helix 56	AG2	d	115	119	Right-handed 310
Helix 57	AG3	d	129	159	Right-handed alpha
Helix 58	AG4	d	163	191	Right-handed alpha
Helix 59	AG5	d	200	204	Right-handed 310
Helix 60	AG6	d	205	225	Right-handed alpha
Helix 61	AG7	d	225	230	Right-handed alpha
Helix 62	AG8	e	2	32	Right-handed alpha
Helix 63	AG9	e	37	44	Right-handed alpha
Helix 64	AH1	e	60	83	Right-handed alpha
Helix 65	AH2	e	86	116	Right-handed alpha
Helix 66	AH3	e	117	121	Right-handed 310
Helix 67	AH4	e	126	155	Right-handed alpha
Helix 68	AH5	e	166	183	Right-handed alpha
Helix 69	AH6	e	185	193	Right-handed alpha
Helix 70	AH7	e	206	210	Right-handed 310
Helix 71	AH8	e	223	232	Right-handed alpha
Helix 72	AH9	e	234	289	Right-handed alpha
Helix 73	AI1	f	10	40	Right-handed alpha
Helix 74	AI2	f	40	65	Right-handed alpha
Helix 75	AI3	g	15	68	Right-handed alpha
Helix 76	AI4	g	72	83	Right-handed alpha
Helix 77	AI5	Q	184	238	Right-handed alpha
Helix 78	AI6	R	37	56	Right-handed alpha
Helix 79	AI7	R	73	100	Right-handed alpha
Helix 80	AI8	S	14	32	Right-handed alpha
Helix 81	AI9	S	39	65	Right-handed alpha
Helix 82	AJ1	S	69	91	Right-handed alpha
Helix 83	AJ2	S	92	95	Right-handed 310
Helix 84	AJ3	S	100	123	Right-handed alpha
Helix 85	AJ4	S	130	155	Right-handed alpha
Helix 86	AJ5	S	158	166	Right-handed alpha
Helix 87	AJ6	S	170	191	Right-handed alpha
Helix 88	AJ7	S	196	218	Right-handed alpha
Helix 89	AJ8	S	225	252	Right-handed alpha
Helix 90	AJ9	T	2	22	Right-handed alpha
Helix 91	AK1	T	28	32	Right-handed 310
Helix 92	AK2	T	42	60	Right-handed alpha
Helix 93	AK3	T	65	95	Right-handed alpha
Helix 94	AK4	T	129	159	Right-handed alpha
Helix 95	AK5	T	163	191	Right-handed alpha
Helix 96	AK6	T	200	204	Right-handed 310
Helix 97	AK7	T	205	225	Right-handed alpha
Helix 98	AK8	T	225	230	Right-handed alpha
Helix 99	AK9	U	2	32	Right-handed alpha
Helix 100	AL1	U	37	44	Right-handed alpha
Helix 101	AL2	U	60	83	Right-handed alpha
Helix 102	AL3	U	86	116	Right-handed alpha
Helix 103	AL4	U	117	121	Right-handed 310
Helix 104	AL5	U	126	155	Right-handed alpha
Helix 105	AL6	U	166	183	Right-handed alpha
Helix 106	AL7	U	185	193	Right-handed alpha
Helix 107	AL8	U	206	210	Right-handed 310
Helix 108	AL9	U	223	232	Right-handed alpha
Helix 109	AM1	U	234	289	Right-handed alpha
Helix 110	AM2	V	10	40	Right-handed alpha
Helix 111	AM3	V	40	65	Right-handed alpha
Helix 112	AM4	W	15	68	Right-handed alpha
Helix 113	AM5	W	72	82	Right-handed alpha

There are 6 sheets in PDB entry 8Q3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	g	11	13	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	E	124	125	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	R	32	34	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	32	34	first strand
Strand 2	W	11	13	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	255	256	first strand
Strand 2	e	124	125	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	255	256	first strand
Strand 2	U	124	125	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q3V