Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q41 entry

There are 5 chains in PDB entry 8Q41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LYS 437
B
 GLU 3LYS 437
D
 T 0 A 4
C
 T 0 A 4
X
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8Q41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
47 59Right-handed alpha
Helix 5
AA5
A
60 62Right-handed 310
Helix 6
AA6
A
74 86Right-handed alpha
Helix 7
AA7
A
102 117Right-handed alpha
Helix 8
AA8
A
154 162Right-handed alpha
Helix 9
AA9
A
175 181Right-handed alpha
Helix 10
AB1
A
184 198Right-handed alpha
Helix 11
AB2
A
200 210Right-handed alpha
Helix 12
AB3
A
211 217Right-handed alpha
Helix 13
AB4
A
225 236Right-handed alpha
Helix 14
AB5
A
243 251Right-handed alpha
Helix 15
AB6
A
253 261Right-handed alpha
Helix 16
AB7
A
262 263Right-handed 310
Helix 17
AB8
A
264 268Right-handed 310
Helix 18
AB9
A
283 299Right-handed alpha
Helix 19
AC1
A
300 318Right-handed alpha
Helix 20
AC2
A
362 382Right-handed alpha
Helix 21
AC3
A
394 406Right-handed alpha
Helix 22
AC4
A
420 424Right-handed 310
Helix 23
AC5
A
426 437Right-handed alpha
Helix 24
AC6
B
14 25Right-handed alpha
Helix 25
AC7
B
39 43Right-handed 310
Helix 26
AC8
B
47 58Right-handed alpha
Helix 27
AC9
B
74 86Right-handed alpha
Helix 28
AD1
B
102 116Right-handed alpha
Helix 29
AD2
B
154 162Right-handed alpha
Helix 30
AD3
B
171 174Right-handed 310
Helix 31
AD4
B
175 181Right-handed alpha
Helix 32
AD5
B
184 198Right-handed alpha
Helix 33
AD6
B
200 210Right-handed alpha
Helix 34
AD7
B
211 217Right-handed alpha
Helix 35
AD8
B
225 237Right-handed alpha
Helix 36
AD9
B
244 251Right-handed alpha
Helix 37
AE1
B
253 262Right-handed alpha
Helix 38
AE2
B
263 268Right-handed 310
Helix 39
AE3
B
283 299Right-handed alpha
Helix 40
AE4
B
300 315Right-handed alpha
Helix 41
AE5
B
362 382Right-handed alpha
Helix 42
AE6
B
394 406Right-handed alpha
Helix 43
AE7
B
420 424Right-handed 310
Helix 44
AE8
B
426 436Right-handed alpha
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There are 4 sheets in PDB entry 8Q41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
30 36parallel
Strand 3
A
4 9parallel
Strand 4
A
93 97parallel
Strand 5
A
123 130parallel
Strand 6
A
135 138anti-parallel
Strand 7
A
144 146anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
351 357anti-parallel
Strand 5
A
386 390parallel
Strand 6
A
416 419parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
30 36parallel
Strand 3
B
4 9parallel
Strand 4
B
93 97parallel
Strand 5
B
125 130parallel
Strand 6
B
135 138anti-parallel
Strand 7
B
145 146anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
326 333anti-parallel
Strand 3
B
339 348anti-parallel
Strand 4
B
351 357anti-parallel
Strand 5
B
386 390parallel
Strand 6
B
416 419parallel
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