Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q43 entry

There are 5 chains in PDB entry 8Q43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6PHE 436
B
 MET 1LYS 437
C
 C -1 C 3
D
 C -1 C 3
X
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8Q43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
102 111Right-handed alpha
Helix 6
AA6
A
154 162Right-handed alpha
Helix 7
AA7
A
175 181Right-handed alpha
Helix 8
AA8
A
184 198Right-handed alpha
Helix 9
AA9
A
200 210Right-handed alpha
Helix 10
AB1
A
211 217Right-handed alpha
Helix 11
AB2
A
225 237Right-handed alpha
Helix 12
AB3
A
238 242Right-handed 310
Helix 13
AB4
A
243 250Right-handed alpha
Helix 14
AB5
A
253 262Right-handed alpha
Helix 15
AB6
A
263 268Right-handed 310
Helix 16
AB7
A
283 299Right-handed alpha
Helix 17
AB8
A
300 316Right-handed alpha
Helix 18
AB9
A
317 319Right-handed 310
Helix 19
AC1
A
362 382Right-handed alpha
Helix 20
AC2
A
394 406Right-handed alpha
Helix 21
AC3
A
420 424Right-handed 310
Helix 22
AC4
A
426 436Right-handed alpha
Helix 23
AC5
B
13 25Right-handed alpha
Helix 24
AC6
B
26 28Right-handed 310
Helix 25
AC7
B
39 43Right-handed 310
Helix 26
AC8
B
47 59Right-handed alpha
Helix 27
AC9
B
60 62Right-handed 310
Helix 28
AD1
B
74 84Right-handed alpha
Helix 29
AD2
B
102 116Right-handed alpha
Helix 30
AD3
B
154 162Right-handed alpha
Helix 31
AD4
B
175 181Right-handed alpha
Helix 32
AD5
B
184 197Right-handed alpha
Helix 33
AD6
B
200 210Right-handed alpha
Helix 34
AD7
B
211 217Right-handed alpha
Helix 35
AD8
B
221 224Right-handed 310
Helix 36
AD9
B
225 236Right-handed alpha
Helix 37
AE1
B
243 252Right-handed alpha
Helix 38
AE2
B
253 262Right-handed alpha
Helix 39
AE3
B
264 268Right-handed 310
Helix 40
AE4
B
283 299Right-handed alpha
Helix 41
AE5
B
300 318Right-handed alpha
Helix 42
AE6
B
362 382Right-handed alpha
Helix 43
AE7
B
394 406Right-handed alpha
Helix 44
AE8
B
420 425Right-handed 310
Helix 45
AE9
B
426 436Right-handed alpha
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There are 5 sheets in PDB entry 8Q43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
31 36parallel
Strand 3
A
7 9parallel
Strand 4
A
96 97parallel
Strand 5
A
126 130parallel
Strand 6
A
135 138anti-parallel
Strand 7
A
145 146anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
326 333anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
351 357anti-parallel
Strand 5
A
386 390parallel
Strand 6
A
416 419parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
274 275anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
30 36parallel
Strand 3
B
5 9parallel
Strand 4
B
94 97parallel
Strand 5
B
124 130parallel
Strand 6
B
135 138anti-parallel
Strand 7
B
144 146anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 170first strand
Strand 2
B
326 334anti-parallel
Strand 3
B
339 348anti-parallel
Strand 4
B
351 357anti-parallel
Strand 5
B
386 390parallel
Strand 6
B
416 419parallel
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