Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q4H entry

There are 4 chains in PDB entry 8Q4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 49	GLN 551
B	THR 49	GLN 551
C	MET 1	ALA 89
D	MET 1	ALA 89

There are 56 helices in PDB entry 8Q4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	71	80	Right-handed 310
Helix 3	AA3	A	90	95	Right-handed alpha
Helix 4	AA4	A	102	112	Right-handed alpha
Helix 5	AA5	A	119	133	Right-handed alpha
Helix 6	AA6	A	146	157	Right-handed alpha
Helix 7	AA7	A	157	164	Right-handed alpha
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	206	213	Right-handed alpha
Helix 10	AB1	A	221	237	Right-handed alpha
Helix 11	AB2	A	247	251	Right-handed 310
Helix 12	AB3	A	276	283	Right-handed alpha
Helix 13	AB4	A	297	302	Right-handed alpha
Helix 14	AB5	A	317	322	Right-handed alpha
Helix 15	AB6	A	326	354	Right-handed alpha
Helix 16	AB7	A	367	375	Right-handed alpha
Helix 17	AB8	A	415	424	Right-handed alpha
Helix 18	AB9	A	424	429	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	463	475	Right-handed alpha
Helix 21	AC3	A	479	484	Right-handed alpha
Helix 22	AC4	A	492	502	Right-handed alpha
Helix 23	AC5	A	506	518	Right-handed alpha
Helix 24	AC6	A	527	532	Right-handed alpha
Helix 25	AC7	A	533	545	Right-handed alpha
Helix 26	AC8	B	64	68	Right-handed 310
Helix 27	AC9	B	71	80	Right-handed 310
Helix 28	AD1	B	90	95	Right-handed alpha
Helix 29	AD2	B	102	112	Right-handed alpha
Helix 30	AD3	B	119	133	Right-handed alpha
Helix 31	AD4	B	146	157	Right-handed alpha
Helix 32	AD5	B	157	164	Right-handed alpha
Helix 33	AD6	B	166	170	Right-handed 310
Helix 34	AD7	B	206	213	Right-handed alpha
Helix 35	AD8	B	221	237	Right-handed alpha
Helix 36	AD9	B	247	251	Right-handed 310
Helix 37	AE1	B	276	283	Right-handed alpha
Helix 38	AE2	B	297	302	Right-handed alpha
Helix 39	AE3	B	317	322	Right-handed alpha
Helix 40	AE4	B	326	354	Right-handed alpha
Helix 41	AE5	B	367	375	Right-handed alpha
Helix 42	AE6	B	415	424	Right-handed alpha
Helix 43	AE7	B	424	429	Right-handed alpha
Helix 44	AE8	B	445	449	Right-handed 310
Helix 45	AE9	B	463	475	Right-handed alpha
Helix 46	AF1	B	479	484	Right-handed alpha
Helix 47	AF2	B	492	502	Right-handed alpha
Helix 48	AF3	B	506	518	Right-handed alpha
Helix 49	AF4	B	527	532	Right-handed alpha
Helix 50	AF5	B	533	545	Right-handed alpha
Helix 51	AF6	C	3	31	Right-handed alpha
Helix 52	AF7	C	34	61	Right-handed alpha
Helix 53	AF8	C	64	88	Right-handed alpha
Helix 54	AF9	D	3	31	Right-handed alpha
Helix 55	AG1	D	34	61	Right-handed alpha
Helix 56	AG2	D	64	88	Right-handed alpha

There are 14 sheets in PDB entry 8Q4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	194	197	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	188	189	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	245	first strand
Strand 2	A	308	315	anti-parallel
Strand 3	A	395	402	anti-parallel
Strand 4	A	358	361	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	291	294	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	264	first strand
Strand 2	A	270	273	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	458	459	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	194	197	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	188	189	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	245	first strand
Strand 2	B	308	315	anti-parallel
Strand 3	B	395	402	anti-parallel
Strand 4	B	358	361	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	291	294	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	264	first strand
Strand 2	B	270	273	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	386	387	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	458	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q4H