Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q4L entry

There are 3 chains in PDB entry 8Q4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7MET 583
B
 MET 1THR 231
C
 MET 1THR 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8Q4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
113 123Right-handed alpha
Helix 4
AA4
A
135 141Right-handed alpha
Helix 5
AA5
A
142 147Right-handed alpha
Helix 6
AA6
A
147 152Right-handed alpha
Helix 7
AA7
A
166 169Right-handed 310
Helix 8
AA8
A
170 175Right-handed alpha
Helix 9
AA9
A
197 206Right-handed alpha
Helix 10
AB1
A
213 230Right-handed alpha
Helix 11
AB2
A
263 277Right-handed alpha
Helix 12
AB3
A
289 307Right-handed alpha
Helix 13
AB4
A
311 343Right-handed alpha
Helix 14
AB5
A
349 372Right-handed alpha
Helix 15
AB6
A
375 377Right-handed 310
Helix 16
AB7
A
378 424Right-handed alpha
Helix 17
AB8
A
431 450Right-handed alpha
Helix 18
AB9
A
456 468Right-handed alpha
Helix 19
AC1
A
468 479Right-handed alpha
Helix 20
AC2
A
483 564Right-handed alpha
Helix 21
AC3
A
565 583Right-handed alpha
Helix 22
AC4
B
2 16Right-handed alpha
Helix 23
AC5
B
18 31Right-handed alpha
Helix 24
AC6
B
37 68Right-handed alpha
Helix 25
AC7
B
80 107Right-handed alpha
Helix 26
AC8
B
113 135Right-handed alpha
Helix 27
AC9
B
138 162Right-handed alpha
Helix 28
AD1
B
166 183Right-handed alpha
Helix 29
AD2
B
186 203Right-handed alpha
Helix 30
AD3
B
208 231Right-handed alpha
Helix 31
AD4
C
2 16Right-handed alpha
Helix 32
AD5
C
18 32Right-handed alpha
Helix 33
AD6
C
37 67Right-handed alpha
Helix 34
AD7
C
68 70Right-handed 310
Helix 35
AD8
C
80 105Right-handed alpha
Helix 36
AD9
C
113 134Right-handed alpha
Helix 37
AE1
C
136 162Right-handed alpha
Helix 38
AE2
C
166 183Right-handed alpha
Helix 39
AE3
C
186 203Right-handed alpha
Helix 40
AE4
C
204 208Right-handed 310
Helix 41
AE5
C
212 230Right-handed alpha
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There are 3 sheets in PDB entry 8Q4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 23anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
125 131parallel
Strand 3
A
177 183parallel
Strand 4
A
233 237parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
286 287anti-parallel
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