Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q4Y entry

There is 1 chain in PDB entry 8Q4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	PRO 1244

There are 17 helices in PDB entry 8Q4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	122	Right-handed 310
Helix 2	AA2	A	217	222	Right-handed alpha
Helix 3	AA3	A	356	370	Right-handed alpha
Helix 4	AA4	A	383	394	Right-handed alpha
Helix 5	AA5	A	413	416	Right-handed 310
Helix 6	AA6	A	417	434	Right-handed alpha
Helix 7	AA7	A	453	471	Right-handed alpha
Helix 8	AA8	A	494	504	Right-handed alpha
Helix 9	AA9	A	512	514	Right-handed 310
Helix 10	AB1	A	515	523	Right-handed alpha
Helix 11	AB2	A	573	584	Right-handed alpha
Helix 12	AB3	A	602	606	Right-handed 310
Helix 13	AB4	A	626	637	Right-handed alpha
Helix 14	AB5	A	883	885	Right-handed 310
Helix 15	AB6	A	897	902	Right-handed 310
Helix 16	AB7	A	971	976	Right-handed alpha
Helix 17	AB8	A	1031	1037	Right-handed 310

There are 21 sheets in PDB entry 8Q4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	156	159	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	109	115	anti-parallel
Strand 4	A	171	177	anti-parallel
Strand 5	A	137	141	anti-parallel
Strand 6	A	144	149	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	274	276	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	226	231	anti-parallel
Strand 3	A	279	284	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	243	252	anti-parallel
Strand 3	A	267	269	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	243	252	anti-parallel
Strand 3	A	297	305	anti-parallel
Strand 4	A	308	317	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	329	332	anti-parallel
Strand 3	A	335	336	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	532	first strand
Strand 2	A	507	510	parallel
Strand 3	A	476	480	parallel
Strand 4	A	439	446	parallel
Strand 5	A	396	400	parallel
Strand 6	A	374	377	parallel
Strand 7	A	339	344	parallel
Strand 8	A	589	592	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	537	first strand
Strand 2	A	566	567	anti-parallel
Strand 3	A	550	551	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	655	662	anti-parallel
Strand 3	A	702	707	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	680	first strand
Strand 2	A	666	671	anti-parallel
Strand 3	A	712	718	anti-parallel
Strand 4	A	724	731	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	685	first strand
Strand 2	A	691	694	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	738	first strand
Strand 2	A	763	764	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	743	first strand
Strand 2	A	755	761	anti-parallel
Strand 3	A	812	819	anti-parallel
Strand 4	A	785	791	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	835	845	parallel
Strand 3	A	824	832	anti-parallel
Strand 4	A	776	783	anti-parallel
Strand 5	A	805	807	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	858	first strand
Strand 2	A	876	881	anti-parallel
Strand 3	A	887	893	anti-parallel
Strand 4	A	905	913	anti-parallel
Strand 5	A	919	927	anti-parallel
Strand 6	A	861	866	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	936	938	first strand
Strand 2	A	994	999	parallel
Strand 3	A	983	987	anti-parallel
Strand 4	A	961	967	anti-parallel
Strand 5	A	950	953	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1023	first strand
Strand 2	A	1063	1067	anti-parallel
Strand 3	A	1131	1138	anti-parallel
Strand 4	A	1090	1098	anti-parallel
Strand 5	A	1104	1105	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1050	1051	first strand
Strand 2	A	1146	1147	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1165	1170	first strand
Strand 2	A	1198	1202	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1189	first strand
Strand 2	A	1235	1241	parallel
Strand 3	A	1219	1222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q4Y