Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q50 entry

There is 1 chain in PDB entry 8Q50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8Q50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 39Right-handed alpha
Helix 2
AA2
A
65 73Right-handed alpha
Helix 3
AA3
A
79 83Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
105 120Right-handed alpha
Helix 6
AA6
A
140 150Right-handed alpha
Helix 7
AA7
A
162 184Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
223 231Right-handed alpha
Helix 10
AB1
A
234 239Right-handed alpha
Helix 11
AB2
A
242 258Right-handed alpha
Helix 12
AB3
A
268 279Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8Q50.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
42 47parallel
Strand 4
A
129 135parallel
Strand 5
A
11 17parallel
Strand 6
A
154 159parallel
Strand 7
A
186 193parallel
Strand 8
A
215 219parallel
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