Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q56 entry

There are 2 chains in PDB entry 8Q56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1225
B
 SER 3GLU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8Q56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 29Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
76 101Right-handed alpha
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
125 134Right-handed alpha
Helix 6
AA6
A
137 145Right-handed alpha
Helix 7
AA7
A
150 166Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
194 202Right-handed alpha
Helix 10
AB1
A
204 209Right-handed 310
Helix 11
AB2
A
212 222Right-handed alpha
Helix 12
AB3
A
222 229Right-handed alpha
Helix 13
AB4
A
238 243Right-handed alpha
Helix 14
AB5
A
248 258Right-handed alpha
Helix 15
AB6
A
259 268Right-handed alpha
Helix 16
AB7
A
271 276Right-handed 310
Helix 17
AB8
A
287 295Right-handed alpha
Helix 18
AB9
A
317 335Right-handed alpha
Helix 19
AC1
A
337 339Right-handed 310
Helix 20
AC2
A
340 349Right-handed alpha
Helix 21
AC3
A
356 373Right-handed alpha
Helix 22
AC4
A
397 406Right-handed alpha
Helix 23
AC5
A
431 444Right-handed alpha
Helix 24
AC6
A
446 451Right-handed alpha
Helix 25
AC7
A
452 454Right-handed 310
Helix 26
AC8
A
459 477Right-handed alpha
Helix 27
AC9
A
479 501Right-handed alpha
Helix 28
AD1
A
519 530Right-handed alpha
Helix 29
AD2
A
536 545Right-handed alpha
Helix 30
AD3
A
562 565Right-handed 310
Helix 31
AD4
A
566 568Right-handed 310
Helix 32
AD5
A
569 580Right-handed alpha
Helix 33
AD6
A
627 637Right-handed alpha
Helix 34
AD7
A
649 653Right-handed 310
Helix 35
AD8
A
664 673Right-handed alpha
Helix 36
AD9
A
690 694Right-handed alpha
Helix 37
AE1
A
750 755Right-handed alpha
Helix 38
AE2
A
769 773Right-handed 310
Helix 39
AE3
A
810 821Right-handed alpha
Helix 40
AE4
A
823 834Right-handed alpha
Helix 41
AE5
A
843 846Right-handed 310
Helix 42
AE6
A
853 872Right-handed alpha
Helix 43
AE7
A
883 888Right-handed 310
Helix 44
AE8
A
893 927Right-handed alpha
Helix 45
AE9
A
938 942Right-handed 310
Helix 46
AF1
A
947 952Right-handed alpha
Helix 47
AF2
A
958 982Right-handed alpha
Helix 48
AF3
A
996 1000Right-handed 310
Helix 49
AF4
A
1001 1007Right-handed alpha
Helix 50
AF5
A
1033 1047Right-handed alpha
Helix 51
AF6
A
1050 1063Right-handed alpha
Helix 52
AF7
A
1074 1096Right-handed alpha
Helix 53
AF8
A
1119 1121Right-handed 310
Helix 54
AF9
A
1124 1132Right-handed alpha
Helix 55
AG1
A
1133 1149Right-handed alpha
Helix 56
AG2
A
1157 1189Right-handed alpha
Helix 57
AG3
A
1195 1198Right-handed 310
Helix 58
AG4
A
1199 1204Right-handed alpha
Helix 59
AG5
A
1213 1219Right-handed alpha
Helix 60
AG6
B
6 26Right-handed alpha
Helix 61
AG7
B
29 32Right-handed 310
Helix 62
AG8
B
33 43Right-handed alpha
Helix 63
AG9
B
48 57Right-handed alpha
Helix 64
AH1
B
67 71Right-handed 310
Helix 65
AH2
B
76 95Right-handed alpha
Helix 66
AH3
B
96 106Right-handed alpha
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There are 6 sheets in PDB entry 8Q56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
49 51anti-parallel
Strand 3
A
57 58anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
309 311parallel
Strand 3
A
503 508parallel
Strand 4
A
549 560parallel
Strand 5
A
602 609anti-parallel
Strand 6
A
581 590anti-parallel
Strand 7
A
619 622parallel
Strand 8
A
641 642anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 675first strand
Strand 2
A
848 849anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
805 807anti-parallel
Strand 3
A
777 780anti-parallel
Strand 4
A
790 793anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
742 745anti-parallel
Strand 3
A
724 728anti-parallel
Strand 4
A
798 799parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1021 1023first strand
Strand 2
A
1113 1117anti-parallel
Strand 3
A
1101 1105anti-parallel
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