Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q5D entry

There are 6 chains in PDB entry 8Q5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 157	GLN 502
B	VAL 2	PRO 218
C	ASP 1	PHE 210
D	ILE 157	ILE 498
E	VAL 2	LYS 219
F	ASP 1	ARG 212

There are 35 helices in PDB entry 8Q5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	176	196	Right-handed alpha
Helix 2	AA2	A	197	201	Right-handed 310
Helix 3	AA3	A	202	222	Right-handed alpha
Helix 4	AA4	A	224	239	Right-handed alpha
Helix 5	AA5	A	301	321	Right-handed alpha
Helix 6	AA6	A	321	341	Right-handed alpha
Helix 7	AA7	A	353	364	Right-handed alpha
Helix 8	AA8	A	364	374	Right-handed alpha
Helix 9	AA9	A	375	397	Right-handed alpha
Helix 10	AB1	A	405	446	Right-handed alpha
Helix 11	AB2	A	451	498	Right-handed alpha
Helix 12	AB3	B	62	65	Right-handed 310
Helix 13	AB4	B	87	91	Right-handed 310
Helix 14	AB5	B	161	163	Right-handed 310
Helix 15	AB6	C	79	83	Right-handed 310
Helix 16	AB7	C	122	127	Right-handed alpha
Helix 17	AB8	C	184	190	Right-handed alpha
Helix 18	AB9	D	176	196	Right-handed alpha
Helix 19	AC1	D	197	201	Right-handed 310
Helix 20	AC2	D	202	222	Right-handed alpha
Helix 21	AC3	D	224	239	Right-handed alpha
Helix 22	AC4	D	301	321	Right-handed alpha
Helix 23	AC5	D	321	341	Right-handed alpha
Helix 24	AC6	D	353	364	Right-handed alpha
Helix 25	AC7	D	364	374	Right-handed alpha
Helix 26	AC8	D	375	397	Right-handed alpha
Helix 27	AC9	D	405	446	Right-handed alpha
Helix 28	AD1	D	451	498	Right-handed alpha
Helix 29	AD2	E	62	65	Right-handed 310
Helix 30	AD3	E	87	91	Right-handed 310
Helix 31	AD4	E	161	163	Right-handed 310
Helix 32	AD5	E	205	209	Right-handed 310
Helix 33	AD6	F	79	83	Right-handed 310
Helix 34	AD7	F	122	127	Right-handed alpha
Helix 35	AD8	F	184	190	Right-handed alpha

There are 27 sheets in PDB entry 8Q5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	172	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	449	450	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	22	24	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	105	108	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	78	83	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	181	189	anti-parallel
Strand 4	B	168	170	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	181	189	anti-parallel
Strand 4	B	174	175	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	200	202	anti-parallel
Strand 3	B	213	215	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	19	29	anti-parallel
Strand 3	C	62	75	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	103	105	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	130	138	anti-parallel
Strand 3	C	175	183	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	207	209	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	172	175	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	352	first strand
Strand 2	D	449	450	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	22	24	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	116	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	57	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	116	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	107	108	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	78	83	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	168	170	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	174	175	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	159	first strand
Strand 2	E	200	202	anti-parallel
Strand 3	E	213	215	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	19	29	anti-parallel
Strand 3	F	62	75	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	105	parallel
Strand 3	F	85	91	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	105	parallel
Strand 3	F	85	91	anti-parallel
Strand 4	F	97	99	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	156	first strand
Strand 2	F	146	151	anti-parallel
Strand 3	F	192	198	anti-parallel
Strand 4	F	207	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5D