Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q5H entry

There are 7 chains in PDB entry 8Q5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
4	VAL 131	GLU 196
5	ALA 123	ASN 224
A	MET 1	SER 205
B	ILE 32	GLU 205
D	PRO 112	LYS 338
K	SER 2133	HIS 2342
N	ARG 33	LEU 272

There are 39 helices in PDB entry 8Q5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	4	131	148	Right-handed alpha
Helix 2	AA2	4	181	193	Right-handed alpha
Helix 3	AA3	5	124	141	Right-handed alpha
Helix 4	AA4	5	194	204	Right-handed alpha
Helix 5	AA5	5	207	221	Right-handed alpha
Helix 6	AA6	5	222	224	Right-handed 310
Helix 7	AA7	A	8	14	Right-handed alpha
Helix 8	AA8	A	16	50	Right-handed alpha
Helix 9	AA9	A	56	87	Right-handed alpha
Helix 10	AB1	A	99	106	Right-handed alpha
Helix 11	AB2	A	110	170	Right-handed alpha
Helix 12	AB3	A	173	205	Right-handed alpha
Helix 13	AB4	B	33	52	Right-handed alpha
Helix 14	AB5	B	53	65	Right-handed alpha
Helix 15	AB6	B	69	98	Right-handed alpha
Helix 16	AB7	B	100	116	Right-handed alpha
Helix 17	AB8	B	128	189	Right-handed alpha
Helix 18	AB9	B	189	201	Right-handed alpha
Helix 19	AC1	D	129	150	Right-handed alpha
Helix 20	AC2	D	151	153	Right-handed 310
Helix 21	AC3	D	161	183	Right-handed alpha
Helix 22	AC4	D	188	192	Right-handed 310
Helix 23	AC5	D	203	245	Right-handed alpha
Helix 24	AC6	D	264	270	Right-handed alpha
Helix 25	AC7	D	273	327	Right-handed alpha
Helix 26	AC8	D	331	338	Right-handed alpha
Helix 27	AC9	K	2192	2208	Right-handed alpha
Helix 28	AD1	K	2211	2216	Right-handed alpha
Helix 29	AD2	K	2221	2250	Right-handed alpha
Helix 30	AD3	K	2251	2253	Right-handed 310
Helix 31	AD4	K	2305	2316	Right-handed alpha
Helix 32	AD5	K	2321	2335	Right-handed alpha
Helix 33	AD6	N	43	54	Right-handed alpha
Helix 34	AD7	N	54	62	Right-handed alpha
Helix 35	AD8	N	68	87	Right-handed alpha
Helix 36	AD9	N	104	151	Right-handed alpha
Helix 37	AE1	N	166	213	Right-handed alpha
Helix 38	AE2	N	214	222	Right-handed alpha
Helix 39	AE3	N	265	270	Right-handed alpha

There are 5 sheets in PDB entry 8Q5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	149	151	first strand
Strand 2	4	160	164	anti-parallel
Strand 3	4	171	175	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	144	149	first strand
Strand 2	5	153	158	anti-parallel
Strand 3	5	170	176	anti-parallel
Strand 4	5	182	188	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2135	2140	first strand
Strand 2	K	2144	2149	anti-parallel
Strand 3	K	2154	2160	anti-parallel
Strand 4	K	2177	2184	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2258	2259	first strand
Strand 2	K	2265	2271	anti-parallel
Strand 3	K	2276	2282	anti-parallel
Strand 4	K	2295	2301	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	39	first strand
Strand 2	N	88	89	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5H