Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5J entry

There is 1 chain in PDB entry 8Q5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13ARG 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8Q5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 26Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
72 85Right-handed 310
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
99 101Right-handed 310
Helix 7
AA7
A
102 127Right-handed alpha
Helix 8
AA8
A
137 151Right-handed alpha
Helix 9
AA9
A
156 172Right-handed alpha
Helix 10
AB1
A
176 204Right-handed alpha
Helix 11
AB2
A
208 219Right-handed alpha
Helix 12
AB3
A
223 238Right-handed alpha
Helix 13
AB4
A
239 256Right-handed alpha
Helix 14
AB5
A
256 266Right-handed alpha
Helix 15
AB6
A
269 281Right-handed alpha
Helix 16
AB7
A
311 316Right-handed alpha
Helix 17
AB8
A
332 337Right-handed 310
Helix 18
AB9
A
344 348Right-handed 310
Helix 19
AC1
A
351 370Right-handed alpha
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There are 4 sheets in PDB entry 8Q5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
287 290anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
394 398anti-parallel
Strand 3
A
372 375anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
390 392anti-parallel
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