Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5O entry

There are 8 chains in PDB entry 8Q5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ILE 160
B
 SER 8SER 159
C
 C 1 G 3
C
 T 5 G 6
C
 T 8 C 9
D
 G 1 G 3
D
 A 5 G 6
D
 A 8 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8Q5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed 310
Helix 2
AA2
A
19 20Right-handed 310
Helix 3
AA3
A
22 22Right-handed 310
Helix 4
AA4
A
23 34Right-handed alpha
Helix 5
AA5
A
42 57Right-handed alpha
Helix 6
AA6
A
99 103Right-handed 310
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
149 154Right-handed 310
Helix 9
AA9
B
10 15Right-handed 310
Helix 10
AB1
B
16 34Right-handed alpha
Helix 11
AB2
B
42 57Right-handed alpha
Helix 12
AB3
B
127 132Right-handed alpha
Helix 13
AB4
B
149 154Right-handed alpha
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There are 5 sheets in PDB entry 8Q5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
70 71anti-parallel
Strand 3
A
77 79anti-parallel
Strand 4
A
107 113parallel
Strand 5
A
83 84parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
70 71anti-parallel
Strand 3
A
77 79anti-parallel
Strand 4
A
107 113parallel
Strand 5
A
119 126anti-parallel
Strand 6
A
158 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
142 144anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
70 72anti-parallel
Strand 3
B
77 84anti-parallel
Strand 4
B
107 113parallel
Strand 5
B
119 126anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il