Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5R entry

There are 2 chains in PDB entry 8Q5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 111ILE 266
B
 GLY 64PRO 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8Q5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
211 216Right-handed 310
Helix 2
AA2
A
223 225Right-handed 310
Helix 3
AA3
A
255 259Right-handed 310
Helix 4
AA4
B
67 73Right-handed alpha
Helix 5
AA5
B
74 75Right-handed 310
Helix 6
AA6
B
76 80Right-handed 310
Helix 7
AA7
B
153 160Right-handed alpha
Helix 8
AA8
B
170 175Right-handed alpha
Helix 9
AA9
B
178 183Right-handed 310
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There are 7 sheets in PDB entry 8Q5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
133 136anti-parallel
Strand 3
B
116 120anti-parallel
Strand 4
B
87 91anti-parallel
Strand 5
A
116 125anti-parallel
Strand 6
A
156 163anti-parallel
Strand 7
A
178 185anti-parallel
Strand 8
A
217 221anti-parallel
Strand 9
A
227 230anti-parallel
Strand 10
A
261 264anti-parallel
Strand 11
B
186 187parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
133 136anti-parallel
Strand 3
B
116 120anti-parallel
Strand 4
B
87 91anti-parallel
Strand 5
A
116 125anti-parallel
Strand 6
A
261 264anti-parallel
Strand 7
B
186 187parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
139 145anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
201 206anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
245 250anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
194 195anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
200 204anti-parallel
Strand 3
B
217 223anti-parallel
Strand 4
B
226 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il