Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5T entry

There are 4 chains in PDB entry 8Q5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 281
B
 ASP 4GLY 280
C
 GLU 5LEU 281
D
 SER 2LEU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8Q5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
22 39Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
79 84Right-handed alpha
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
105 120Right-handed alpha
Helix 7
AA7
A
144 149Right-handed alpha
Helix 8
AA8
A
162 184Right-handed alpha
Helix 9
AA9
A
199 212Right-handed alpha
Helix 10
AB1
A
223 231Right-handed alpha
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
242 258Right-handed alpha
Helix 13
AB4
A
268 280Right-handed alpha
Helix 14
AB5
B
22 38Right-handed alpha
Helix 15
AB6
B
54 59Right-handed alpha
Helix 16
AB7
B
65 73Right-handed alpha
Helix 17
AB8
B
79 83Right-handed alpha
Helix 18
AB9
B
88 90Right-handed 310
Helix 19
AC1
B
105 120Right-handed alpha
Helix 20
AC2
B
144 149Right-handed alpha
Helix 21
AC3
B
162 179Right-handed alpha
Helix 22
AC4
B
199 211Right-handed alpha
Helix 23
AC5
B
222 231Right-handed alpha
Helix 24
AC6
B
234 239Right-handed alpha
Helix 25
AC7
B
242 258Right-handed alpha
Helix 26
AC8
B
268 279Right-handed alpha
Helix 27
AC9
C
22 39Right-handed alpha
Helix 28
AD1
C
65 74Right-handed alpha
Helix 29
AD2
C
75 78Right-handed 310
Helix 30
AD3
C
79 84Right-handed alpha
Helix 31
AD4
C
88 90Right-handed 310
Helix 32
AD5
C
105 120Right-handed alpha
Helix 33
AD6
C
144 149Right-handed alpha
Helix 34
AD7
C
162 184Right-handed alpha
Helix 35
AD8
C
199 211Right-handed alpha
Helix 36
AD9
C
222 231Right-handed alpha
Helix 37
AE1
C
234 239Right-handed alpha
Helix 38
AE2
C
242 257Right-handed alpha
Helix 39
AE3
C
268 280Right-handed alpha
Helix 40
AE4
D
2 6Right-handed 310
Helix 41
AE5
D
22 38Right-handed alpha
Helix 42
AE6
D
65 74Right-handed alpha
Helix 43
AE7
D
75 78Right-handed 310
Helix 44
AE8
D
79 84Right-handed alpha
Helix 45
AE9
D
88 90Right-handed 310
Helix 46
AF1
D
105 120Right-handed alpha
Helix 47
AF2
D
141 143Right-handed 310
Helix 48
AF3
D
144 149Right-handed alpha
Helix 49
AF4
D
162 179Right-handed alpha
Helix 50
AF5
D
179 184Right-handed alpha
Helix 51
AF6
D
199 212Right-handed alpha
Helix 52
AF7
D
223 230Right-handed alpha
Helix 53
AF8
D
234 239Right-handed alpha
Helix 54
AF9
D
242 258Right-handed alpha
Helix 55
AG1
D
268 279Right-handed alpha
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There are 4 sheets in PDB entry 8Q5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
42 47parallel
Strand 4
A
129 134parallel
Strand 5
A
11 17parallel
Strand 6
A
154 159parallel
Strand 7
A
186 193parallel
Strand 8
A
215 219parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
92 95anti-parallel
Strand 3
B
42 47parallel
Strand 4
B
129 135parallel
Strand 5
B
11 17parallel
Strand 6
B
154 159parallel
Strand 7
B
186 193parallel
Strand 8
B
215 219parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
92 95anti-parallel
Strand 3
C
42 47parallel
Strand 4
C
129 134parallel
Strand 5
C
11 17parallel
Strand 6
C
154 159parallel
Strand 7
C
186 193parallel
Strand 8
C
215 219parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 86first strand
Strand 2
D
92 95anti-parallel
Strand 3
D
42 47parallel
Strand 4
D
129 135parallel
Strand 5
D
11 17parallel
Strand 6
D
154 159parallel
Strand 7
D
186 193parallel
Strand 8
D
215 219parallel
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