Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q5U entry

There are 2 chains in PDB entry 8Q5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 237	SER 444
D	LYS 45	ALA 471

There are 97 helices in PDB entry 8Q5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	252	Right-handed alpha
Helix 2	AA2	A	309	315	Right-handed alpha
Helix 3	AA3	A	354	360	Right-handed 310
Helix 4	AA4	A	414	419	Right-handed alpha
Helix 5	AA5	A	432	436	Right-handed 310
Helix 6	AA6	D	46	60	Right-handed alpha
Helix 7	AA7	D	74	76	Right-handed 310
Helix 8	AA8	D	92	96	Right-handed 310
Helix 9	AA9	D	115	123	Right-handed alpha
Helix 10	AB1	D	123	130	Right-handed alpha
Helix 11	AB2	D	142	144	Right-handed 310
Helix 12	AB3	D	148	154	Right-handed 310
Helix 13	AB4	D	157	173	Right-handed alpha
Helix 14	AB5	D	194	212	Right-handed alpha
Helix 15	AB6	D	230	233	Right-handed 310
Helix 16	AB7	D	234	241	Right-handed alpha
Helix 17	AB8	D	242	244	Right-handed 310
Helix 18	AB9	D	261	272	Right-handed alpha
Helix 19	AC1	D	276	278	Right-handed 310
Helix 20	AC2	D	309	313	Right-handed 310
Helix 21	AC3	D	317	325	Right-handed alpha
Helix 22	AC4	D	341	344	Right-handed 310
Helix 23	AC5	D	350	354	Right-handed 310
Helix 24	AC6	D	364	368	Right-handed 310
Helix 25	AC7	D	374	386	Right-handed alpha
Helix 26	AC8	D	387	391	Right-handed 310
Helix 27	AC9	D	400	412	Right-handed alpha
Helix 28	AD1	D	414	419	Right-handed alpha
Helix 29	AD2	D	437	441	Right-handed 310
Helix 30	AD3	D	464	470	Right-handed 310
Helix 31	AD4	D	521	536	Right-handed alpha
Helix 32	AD5	D	576	581	Right-handed alpha
Helix 33	AD6	D	594	603	Right-handed alpha
Helix 34	AD7	D	617	622	Right-handed alpha
Helix 35	AD8	D	695	701	Right-handed 310
Helix 36	AD9	D	737	739	Right-handed 310
Helix 37	AE1	D	745	748	Right-handed 310
Helix 38	AE2	D	764	768	Right-handed 310
Helix 39	AE3	D	769	779	Right-handed alpha
Helix 40	AE4	C	246	252	Right-handed alpha
Helix 41	AE5	C	309	315	Right-handed alpha
Helix 42	AE6	C	354	360	Right-handed 310
Helix 43	AE7	C	414	419	Right-handed alpha
Helix 44	AE8	C	432	436	Right-handed 310
Helix 45	AE9	E	265	272	Right-handed alpha
Helix 46	AF1	E	400	412	Right-handed alpha
Helix 47	AF2	E	414	419	Right-handed alpha
Helix 48	AF3	E	437	441	Right-handed 310
Helix 49	AF4	E	464	470	Right-handed 310
Helix 50	AF5	E	521	536	Right-handed alpha
Helix 51	AF6	E	576	581	Right-handed alpha
Helix 52	AF7	E	595	603	Right-handed alpha
Helix 53	AF8	E	617	622	Right-handed alpha
Helix 54	AF9	E	695	701	Right-handed 310
Helix 55	AG1	E	737	739	Right-handed 310
Helix 56	AG2	E	745	748	Right-handed 310
Helix 57	AG3	E	774	779	Right-handed alpha
Helix 58	AG4	F	47	60	Right-handed alpha
Helix 59	AG5	F	74	76	Right-handed 310
Helix 60	AG6	F	92	96	Right-handed 310
Helix 61	AG7	F	115	123	Right-handed alpha
Helix 62	AG8	F	123	132	Right-handed alpha
Helix 63	AG9	F	142	144	Right-handed 310
Helix 64	AH1	F	148	154	Right-handed 310
Helix 65	AH2	F	157	173	Right-handed alpha
Helix 66	AH3	F	194	212	Right-handed alpha
Helix 67	AH4	F	230	233	Right-handed 310
Helix 68	AH5	F	234	241	Right-handed alpha
Helix 69	AH6	F	242	244	Right-handed 310
Helix 70	AH7	F	261	272	Right-handed alpha
Helix 71	AH8	F	276	278	Right-handed 310
Helix 72	AH9	F	317	325	Right-handed alpha
Helix 73	AI1	F	341	344	Right-handed 310
Helix 74	AI2	F	350	354	Right-handed 310
Helix 75	AI3	F	364	368	Right-handed 310
Helix 76	AI4	F	374	386	Right-handed alpha
Helix 77	AI5	F	387	391	Right-handed 310
Helix 78	AI6	F	400	412	Right-handed alpha
Helix 79	AI7	F	414	419	Right-handed alpha
Helix 80	AI8	F	437	441	Right-handed 310
Helix 81	AI9	F	464	470	Right-handed 310
Helix 82	AJ1	F	498	502	Right-handed 310
Helix 83	AJ2	F	521	536	Right-handed alpha
Helix 84	AJ3	F	576	581	Right-handed alpha
Helix 85	AJ4	F	594	603	Right-handed alpha
Helix 86	AJ5	F	617	622	Right-handed alpha
Helix 87	AJ6	F	693	698	Right-handed alpha
Helix 88	AJ7	F	699	701	Right-handed 310
Helix 89	AJ8	F	737	739	Right-handed 310
Helix 90	AJ9	F	745	748	Right-handed 310
Helix 91	AK1	F	764	768	Right-handed 310
Helix 92	AK2	F	769	779	Right-handed alpha
Helix 93	AK3	B	246	252	Right-handed alpha
Helix 94	AK4	B	309	315	Right-handed alpha
Helix 95	AK5	B	354	360	Right-handed 310
Helix 96	AK6	B	414	419	Right-handed alpha
Helix 97	AK7	B	432	436	Right-handed 310

There are 42 sheets in PDB entry 8Q5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	299	307	anti-parallel
Strand 4	A	288	289	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	299	307	anti-parallel
Strand 4	A	293	296	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	274	279	anti-parallel
Strand 3	A	319	324	anti-parallel
Strand 4	A	332	336	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	437	441	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	72	first strand
Strand 2	D	102	106	parallel
Strand 3	D	134	140	parallel
Strand 4	D	180	185	parallel
Strand 5	D	222	227	parallel
Strand 6	D	246	250	parallel
Strand 7	D	280	285	parallel
Strand 8	D	335	339	parallel
Strand 9	D	66	72	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	428	first strand
Strand 2	D	446	450	parallel
Strand 3	D	472	476	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	483	485	parallel
Strand 3	D	507	509	parallel
Strand 4	D	545	546	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	663	671	parallel
Strand 3	D	651	658	anti-parallel
Strand 4	D	629	633	anti-parallel
Strand 5	D	639	641	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	575	first strand
Strand 2	D	644	646	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	585	first strand
Strand 2	D	591	592	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	606	first strand
Strand 2	D	609	610	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	680	first strand
Strand 2	D	823	831	anti-parallel
Strand 3	D	727	735	anti-parallel
Strand 4	D	795	804	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	690	first strand
Strand 2	D	716	721	anti-parallel
Strand 3	D	807	815	anti-parallel
Strand 4	D	750	758	anti-parallel
Strand 5	D	783	789	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	243	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	299	307	anti-parallel
Strand 4	C	288	289	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	243	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	299	307	anti-parallel
Strand 4	C	293	296	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	319	324	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	391	393	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	388	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	423	428	anti-parallel
Strand 4	C	437	441	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	428	first strand
Strand 2	E	446	450	parallel
Strand 3	E	472	476	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	458	first strand
Strand 2	E	483	485	parallel
Strand 3	E	507	509	parallel
Strand 4	E	545	546	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	567	first strand
Strand 2	E	663	671	parallel
Strand 3	E	651	658	anti-parallel
Strand 4	E	629	633	anti-parallel
Strand 5	E	639	641	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	571	571	first strand
Strand 2	E	644	647	anti-parallel
Strand 3	E	574	575	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	584	585	first strand
Strand 2	E	591	592	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	679	680	first strand
Strand 2	E	823	831	anti-parallel
Strand 3	E	727	735	anti-parallel
Strand 4	E	795	804	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	686	690	first strand
Strand 2	E	716	721	anti-parallel
Strand 3	E	807	815	anti-parallel
Strand 4	E	750	758	anti-parallel
Strand 5	E	783	789	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	72	first strand
Strand 2	F	102	106	parallel
Strand 3	F	134	140	parallel
Strand 4	F	180	185	parallel
Strand 5	F	222	227	parallel
Strand 6	F	246	250	parallel
Strand 7	F	280	285	parallel
Strand 8	F	335	339	parallel
Strand 9	F	66	72	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	424	428	first strand
Strand 2	F	446	450	parallel
Strand 3	F	472	476	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	458	first strand
Strand 2	F	483	485	parallel
Strand 3	F	507	509	parallel
Strand 4	F	545	546	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	567	first strand
Strand 2	F	663	671	parallel
Strand 3	F	651	658	anti-parallel
Strand 4	F	629	633	anti-parallel
Strand 5	F	639	641	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	573	575	first strand
Strand 2	F	644	646	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	584	585	first strand
Strand 2	F	591	592	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	679	680	first strand
Strand 2	F	823	831	anti-parallel
Strand 3	F	727	735	anti-parallel
Strand 4	F	795	804	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	686	690	first strand
Strand 2	F	716	721	anti-parallel
Strand 3	F	807	815	anti-parallel
Strand 4	F	750	758	anti-parallel
Strand 5	F	783	789	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	299	307	anti-parallel
Strand 4	B	288	289	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	299	307	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	332	336	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5U