Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q5W entry

There are 5 chains in PDB entry 8Q5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 281
B	PHE 3	TYR 282
C	SER 2	GLY 280
D	ASP 4	GLY 280
E	ASP 4	GLU 202

There are161 helices in PDB entry 8Q5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	37	Right-handed alpha
Helix 2	AA2	A	65	74	Right-handed alpha
Helix 3	AA3	A	79	84	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	107	120	Right-handed alpha
Helix 6	AA6	A	140	143	Right-handed 310
Helix 7	AA7	A	144	149	Right-handed alpha
Helix 8	AA8	A	162	179	Right-handed alpha
Helix 9	AA9	A	179	184	Right-handed alpha
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	A	223	231	Right-handed alpha
Helix 12	AB3	A	234	239	Right-handed alpha
Helix 13	AB4	A	242	257	Right-handed alpha
Helix 14	AB5	A	268	280	Right-handed alpha
Helix 15	AB6	B	22	37	Right-handed alpha
Helix 16	AB7	B	65	74	Right-handed alpha
Helix 17	AB8	B	79	84	Right-handed alpha
Helix 18	AB9	B	88	90	Right-handed 310
Helix 19	AC1	B	107	121	Right-handed alpha
Helix 20	AC2	B	140	149	Right-handed alpha
Helix 21	AC3	B	162	179	Right-handed alpha
Helix 22	AC4	B	179	184	Right-handed alpha
Helix 23	AC5	B	199	212	Right-handed alpha
Helix 24	AC6	B	223	231	Right-handed alpha
Helix 25	AC7	B	234	239	Right-handed alpha
Helix 26	AC8	B	242	257	Right-handed alpha
Helix 27	AC9	B	268	280	Right-handed alpha
Helix 28	AD1	C	22	37	Right-handed alpha
Helix 29	AD2	C	65	73	Right-handed alpha
Helix 30	AD3	C	79	84	Right-handed alpha
Helix 31	AD4	C	88	90	Right-handed 310
Helix 32	AD5	C	107	121	Right-handed alpha
Helix 33	AD6	C	140	149	Right-handed alpha
Helix 34	AD7	C	162	179	Right-handed alpha
Helix 35	AD8	C	179	184	Right-handed alpha
Helix 36	AD9	C	199	212	Right-handed alpha
Helix 37	AE1	C	223	231	Right-handed alpha
Helix 38	AE2	C	234	239	Right-handed alpha
Helix 39	AE3	C	242	257	Right-handed alpha
Helix 40	AE4	C	268	280	Right-handed alpha
Helix 41	AE5	D	22	37	Right-handed alpha
Helix 42	AE6	D	65	74	Right-handed alpha
Helix 43	AE7	D	79	84	Right-handed alpha
Helix 44	AE8	D	88	90	Right-handed 310
Helix 45	AE9	D	107	121	Right-handed alpha
Helix 46	AF1	D	140	149	Right-handed alpha
Helix 47	AF2	D	162	179	Right-handed alpha
Helix 48	AF3	D	179	184	Right-handed alpha
Helix 49	AF4	D	199	212	Right-handed alpha
Helix 50	AF5	D	223	231	Right-handed alpha
Helix 51	AF6	D	234	239	Right-handed alpha
Helix 52	AF7	D	242	257	Right-handed alpha
Helix 53	AF8	D	268	280	Right-handed alpha
Helix 54	AF9	E	22	37	Right-handed alpha
Helix 55	AG1	E	65	74	Right-handed alpha
Helix 56	AG2	E	79	83	Right-handed alpha
Helix 57	AG3	E	88	90	Right-handed 310
Helix 58	AG4	E	107	120	Right-handed alpha
Helix 59	AG5	E	140	149	Right-handed alpha
Helix 60	AG6	E	162	179	Right-handed alpha
Helix 61	AG7	E	179	184	Right-handed alpha
Helix 62	AG8	E	199	212	Right-handed alpha
Helix 63	AG9	E	223	231	Right-handed alpha
Helix 64	AH1	E	234	239	Right-handed alpha
Helix 65	AH2	E	242	257	Right-handed alpha
Helix 66	AH3	E	268	280	Right-handed alpha
Helix 67	AH4	F	22	37	Right-handed alpha
Helix 68	AH5	F	65	78	Right-handed alpha
Helix 69	AH6	F	79	84	Right-handed alpha
Helix 70	AH7	F	88	90	Right-handed 310
Helix 71	AH8	F	107	121	Right-handed alpha
Helix 72	AH9	F	140	143	Right-handed 310
Helix 73	AI1	F	144	149	Right-handed alpha
Helix 74	AI2	F	162	184	Right-handed alpha
Helix 75	AI3	F	199	212	Right-handed alpha
Helix 76	AI4	F	223	231	Right-handed alpha
Helix 77	AI5	F	234	239	Right-handed alpha
Helix 78	AI6	F	242	257	Right-handed alpha
Helix 79	AI7	F	268	280	Right-handed alpha
Helix 80	AI8	G	22	37	Right-handed alpha
Helix 81	AI9	G	65	74	Right-handed alpha
Helix 82	AJ1	G	79	84	Right-handed alpha
Helix 83	AJ2	G	88	90	Right-handed 310
Helix 84	AJ3	G	107	120	Right-handed alpha
Helix 85	AJ4	G	140	143	Right-handed 310
Helix 86	AJ5	G	144	149	Right-handed alpha
Helix 87	AJ6	G	162	179	Right-handed alpha
Helix 88	AJ7	G	179	184	Right-handed alpha
Helix 89	AJ8	G	199	212	Right-handed alpha
Helix 90	AJ9	G	223	231	Right-handed alpha
Helix 91	AK1	G	234	239	Right-handed alpha
Helix 92	AK2	G	242	257	Right-handed alpha
Helix 93	AK3	G	268	280	Right-handed alpha
Helix 94	AK4	H	22	37	Right-handed alpha
Helix 95	AK5	H	65	78	Right-handed alpha
Helix 96	AK6	H	79	84	Right-handed alpha
Helix 97	AK7	H	88	90	Right-handed 310
Helix 98	AK8	H	107	120	Right-handed alpha
Helix 99	AK9	H	140	149	Right-handed alpha
Helix 100	AL1	H	162	179	Right-handed alpha
Helix 101	AL2	H	179	184	Right-handed alpha
Helix 102	AL3	H	199	212	Right-handed alpha
Helix 103	AL4	H	223	231	Right-handed alpha
Helix 104	AL5	H	234	239	Right-handed alpha
Helix 105	AL6	H	242	257	Right-handed alpha
Helix 106	AL7	H	268	280	Right-handed alpha
Helix 107	AL8	I	22	37	Right-handed alpha
Helix 108	AL9	I	65	74	Right-handed alpha
Helix 109	AM1	I	79	84	Right-handed alpha
Helix 110	AM2	I	88	90	Right-handed 310
Helix 111	AM3	I	107	121	Right-handed alpha
Helix 112	AM4	I	140	143	Right-handed 310
Helix 113	AM5	I	144	149	Right-handed alpha
Helix 114	AM6	I	162	179	Right-handed alpha
Helix 115	AM7	I	179	184	Right-handed alpha
Helix 116	AM8	I	199	212	Right-handed alpha
Helix 117	AM9	I	223	231	Right-handed alpha
Helix 118	AN1	I	234	239	Right-handed alpha
Helix 119	AN2	I	242	257	Right-handed alpha
Helix 120	AN3	I	268	280	Right-handed alpha
Helix 121	AN4	J	22	37	Right-handed alpha
Helix 122	AN5	J	65	78	Right-handed alpha
Helix 123	AN6	J	79	84	Right-handed alpha
Helix 124	AN7	J	88	90	Right-handed 310
Helix 125	AN8	J	107	120	Right-handed alpha
Helix 126	AN9	J	140	143	Right-handed 310
Helix 127	AO1	J	144	150	Right-handed alpha
Helix 128	AO2	J	162	179	Right-handed alpha
Helix 129	AO3	J	179	184	Right-handed alpha
Helix 130	AO4	J	199	212	Right-handed alpha
Helix 131	AO5	J	223	231	Right-handed alpha
Helix 132	AO6	J	234	239	Right-handed alpha
Helix 133	AO7	J	242	257	Right-handed alpha
Helix 134	AO8	J	268	280	Right-handed alpha
Helix 135	AO9	K	22	37	Right-handed alpha
Helix 136	AP1	K	65	78	Right-handed alpha
Helix 137	AP2	K	79	84	Right-handed alpha
Helix 138	AP3	K	88	90	Right-handed 310
Helix 139	AP4	K	107	121	Right-handed alpha
Helix 140	AP5	K	140	143	Right-handed 310
Helix 141	AP6	K	144	149	Right-handed alpha
Helix 142	AP7	K	162	179	Right-handed alpha
Helix 143	AP8	K	179	184	Right-handed alpha
Helix 144	AP9	K	199	212	Right-handed alpha
Helix 145	AQ1	K	223	231	Right-handed alpha
Helix 146	AQ2	K	234	239	Right-handed alpha
Helix 147	AQ3	K	242	257	Right-handed alpha
Helix 148	AQ4	K	268	280	Right-handed alpha
Helix 149	AQ5	L	22	37	Right-handed alpha
Helix 150	AQ6	L	65	74	Right-handed alpha
Helix 151	AQ7	L	79	84	Right-handed alpha
Helix 152	AQ8	L	88	90	Right-handed 310
Helix 153	AQ9	L	107	120	Right-handed alpha
Helix 154	AR1	L	140	149	Right-handed alpha
Helix 155	AR2	L	162	179	Right-handed alpha
Helix 156	AR3	L	179	184	Right-handed alpha
Helix 157	AR4	L	199	212	Right-handed alpha
Helix 158	AR5	L	223	231	Right-handed alpha
Helix 159	AR6	L	234	239	Right-handed alpha
Helix 160	AR7	L	242	257	Right-handed alpha
Helix 161	AR8	L	268	280	Right-handed alpha

There are 12 sheets in PDB entry 8Q5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	92	95	anti-parallel
Strand 3	A	42	47	parallel
Strand 4	A	129	134	parallel
Strand 5	A	11	17	parallel
Strand 6	A	154	159	parallel
Strand 7	A	186	193	parallel
Strand 8	A	217	219	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	92	95	anti-parallel
Strand 3	B	42	47	parallel
Strand 4	B	129	134	parallel
Strand 5	B	11	17	parallel
Strand 6	B	154	159	parallel
Strand 7	B	186	193	parallel
Strand 8	B	217	219	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	92	95	anti-parallel
Strand 3	C	42	47	parallel
Strand 4	C	129	134	parallel
Strand 5	C	11	17	parallel
Strand 6	C	154	159	parallel
Strand 7	C	186	193	parallel
Strand 8	C	217	219	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	92	95	anti-parallel
Strand 3	D	42	47	parallel
Strand 4	D	129	134	parallel
Strand 5	D	11	17	parallel
Strand 6	D	154	159	parallel
Strand 7	D	186	193	parallel
Strand 8	D	215	219	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	92	95	anti-parallel
Strand 3	E	42	47	parallel
Strand 4	E	129	134	parallel
Strand 5	E	11	17	parallel
Strand 6	E	154	159	parallel
Strand 7	E	186	193	parallel
Strand 8	E	217	219	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	92	95	anti-parallel
Strand 3	F	42	47	parallel
Strand 4	F	129	134	parallel
Strand 5	F	11	17	parallel
Strand 6	F	154	159	parallel
Strand 7	F	186	193	parallel
Strand 8	F	217	219	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	92	95	anti-parallel
Strand 3	G	43	47	parallel
Strand 4	G	129	134	parallel
Strand 5	G	11	17	parallel
Strand 6	G	154	159	parallel
Strand 7	G	186	193	parallel
Strand 8	G	217	219	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	92	95	anti-parallel
Strand 3	H	42	47	parallel
Strand 4	H	129	134	parallel
Strand 5	H	11	17	parallel
Strand 6	H	154	159	parallel
Strand 7	H	186	193	parallel
Strand 8	H	217	219	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	85	86	first strand
Strand 2	I	92	95	anti-parallel
Strand 3	I	42	47	parallel
Strand 4	I	129	134	parallel
Strand 5	I	11	17	parallel
Strand 6	I	154	159	parallel
Strand 7	I	186	193	parallel
Strand 8	I	217	219	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	85	86	first strand
Strand 2	J	92	95	anti-parallel
Strand 3	J	42	47	parallel
Strand 4	J	129	134	parallel
Strand 5	J	11	17	parallel
Strand 6	J	154	159	parallel
Strand 7	J	186	193	parallel
Strand 8	J	217	219	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	86	first strand
Strand 2	K	92	95	anti-parallel
Strand 3	K	42	47	parallel
Strand 4	K	129	134	parallel
Strand 5	K	11	17	parallel
Strand 6	K	154	159	parallel
Strand 7	K	186	193	parallel
Strand 8	K	217	219	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	86	first strand
Strand 2	L	92	95	anti-parallel
Strand 3	L	42	47	parallel
Strand 4	L	129	134	parallel
Strand 5	L	11	17	parallel
Strand 6	L	154	159	parallel
Strand 7	L	186	193	parallel
Strand 8	L	217	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5W