Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5X entry

There are 4 chains in PDB entry 8Q5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLY 281
B
 VAL 2GLY 281
C
 VAL 2GLU 280
D
 VAL 2ILE 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 8Q5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
57 66Right-handed alpha
Helix 3
AA3
A
67 70Right-handed 310
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
80 82Right-handed 310
Helix 6
AA6
A
99 112Right-handed alpha
Helix 7
AA7
A
113 117Right-handed 310
Helix 8
AA8
A
132 135Right-handed 310
Helix 9
AA9
A
136 141Right-handed alpha
Helix 10
AB1
A
154 176Right-handed alpha
Helix 11
AB2
A
191 204Right-handed alpha
Helix 12
AB3
A
215 223Right-handed alpha
Helix 13
AB4
A
226 231Right-handed alpha
Helix 14
AB5
A
234 250Right-handed alpha
Helix 15
AB6
A
260 271Right-handed alpha
Helix 16
AB7
B
14 30Right-handed alpha
Helix 17
AB8
B
57 66Right-handed alpha
Helix 18
AB9
B
71 76Right-handed alpha
Helix 19
AC1
B
80 82Right-handed 310
Helix 20
AC2
B
99 112Right-handed alpha
Helix 21
AC3
B
113 117Right-handed 310
Helix 22
AC4
B
132 135Right-handed 310
Helix 23
AC5
B
136 141Right-handed alpha
Helix 24
AC6
B
154 176Right-handed alpha
Helix 25
AC7
B
191 204Right-handed alpha
Helix 26
AC8
B
215 223Right-handed alpha
Helix 27
AC9
B
226 231Right-handed alpha
Helix 28
AD1
B
234 250Right-handed alpha
Helix 29
AD2
B
260 271Right-handed alpha
Helix 30
AD3
C
14 29Right-handed alpha
Helix 31
AD4
C
57 66Right-handed alpha
Helix 32
AD5
C
71 76Right-handed alpha
Helix 33
AD6
C
80 82Right-handed 310
Helix 34
AD7
C
99 112Right-handed alpha
Helix 35
AD8
C
113 117Right-handed 310
Helix 36
AD9
C
132 135Right-handed 310
Helix 37
AE1
C
136 141Right-handed alpha
Helix 38
AE2
C
154 176Right-handed alpha
Helix 39
AE3
C
191 204Right-handed alpha
Helix 40
AE4
C
215 223Right-handed alpha
Helix 41
AE5
C
226 231Right-handed alpha
Helix 42
AE6
C
234 250Right-handed alpha
Helix 43
AE7
C
260 271Right-handed alpha
Helix 44
AE8
D
14 31Right-handed alpha
Helix 45
AE9
D
57 66Right-handed alpha
Helix 46
AF1
D
71 76Right-handed alpha
Helix 47
AF2
D
80 82Right-handed 310
Helix 48
AF3
D
99 112Right-handed alpha
Helix 49
AF4
D
113 117Right-handed 310
Helix 50
AF5
D
132 135Right-handed 310
Helix 51
AF6
D
136 141Right-handed alpha
Helix 52
AF7
D
154 176Right-handed alpha
Helix 53
AF8
D
191 204Right-handed alpha
Helix 54
AF9
D
215 222Right-handed alpha
Helix 55
AG1
D
226 231Right-handed alpha
Helix 56
AG2
D
234 250Right-handed alpha
Helix 57
AG3
D
260 271Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8Q5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
121 126parallel
Strand 5
A
3 8parallel
Strand 6
A
146 151parallel
Strand 7
A
178 185parallel
Strand 8
A
207 211parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
34 39parallel
Strand 4
B
121 126parallel
Strand 5
B
3 8parallel
Strand 6
B
146 151parallel
Strand 7
B
178 185parallel
Strand 8
B
207 211parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
84 87anti-parallel
Strand 3
C
34 39parallel
Strand 4
C
121 126parallel
Strand 5
C
3 8parallel
Strand 6
C
146 151parallel
Strand 7
C
178 185parallel
Strand 8
C
207 211parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 78first strand
Strand 2
D
84 87anti-parallel
Strand 3
D
34 39parallel
Strand 4
D
121 126parallel
Strand 5
D
3 8parallel
Strand 6
D
146 151parallel
Strand 7
D
178 185parallel
Strand 8
D
207 211parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il