Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q5Z entry

There is 1 chain in PDB entry 8Q5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8Q5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
43 51Right-handed alpha
Helix 3
AA3
A
77 88Right-handed alpha
Helix 4
AA4
A
108 119Right-handed alpha
Helix 5
AA5
A
129 137Right-handed alpha
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
164 175Right-handed alpha
Helix 8
AA8
A
184 190Right-handed alpha
Helix 9
AA9
A
212 217Right-handed 310
Helix 10
AB1
A
225 236Right-handed alpha
Helix 11
AB2
A
253 264Right-handed alpha
Helix 12
AB3
A
274 283Right-handed alpha
Helix 13
AB4
A
284 286Right-handed 310
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There are 3 sheets in PDB entry 8Q5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
124 127parallel
Strand 3
A
95 99parallel
Strand 4
A
29 33parallel
Strand 5
A
57 58parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
270 272parallel
Strand 3
A
244 247parallel
Strand 4
A
178 181parallel
Strand 5
A
209 210parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
288 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il