Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q63 entry

There are 5 chains in PDB entry 8Q63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2ASP 330
A
 ILE 386SER 1351
N
 A 107 C 137
T
 G 10 T 40
C
 G 102 G 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8Q63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 14Right-handed alpha
Helix 2
AA2
B
25 37Right-handed alpha
Helix 3
AA3
B
38 41Right-handed 310
Helix 4
AA4
B
44 47Right-handed 310
Helix 5
AA5
B
58 69Right-handed alpha
Helix 6
AA6
B
79 90Right-handed alpha
Helix 7
AA7
B
104 113Right-handed alpha
Helix 8
AA8
B
144 157Right-handed alpha
Helix 9
AA9
B
159 164Right-handed 310
Helix 10
AB1
B
174 182Right-handed alpha
Helix 11
AB2
B
190 199Right-handed alpha
Helix 12
AB3
B
209 215Right-handed 310
Helix 13
AB4
B
217 225Right-handed alpha
Helix 14
AB5
B
230 234Right-handed 310
Helix 15
AB6
B
255 267Right-handed alpha
Helix 16
AB7
B
268 270Right-handed 310
Helix 17
AB8
B
273 278Right-handed alpha
Helix 18
AB9
B
279 282Right-handed 310
Helix 19
AC1
B
284 293Right-handed alpha
Helix 20
AC2
B
295 301Right-handed alpha
Helix 21
AC3
B
307 321Right-handed alpha
Helix 22
AC4
A
387 395Right-handed alpha
Helix 23
AC5
A
397 421Right-handed alpha
Helix 24
AC6
A
425 442Right-handed alpha
Helix 25
AC7
A
448 476Right-handed alpha
Helix 26
AC8
A
490 497Right-handed alpha
Helix 27
AC9
A
502 515Right-handed alpha
Helix 28
AD1
A
531 552Right-handed alpha
Helix 29
AD2
A
593 611Right-handed alpha
Helix 30
AD3
A
652 663Right-handed alpha
Helix 31
AD4
A
703 717Right-handed alpha
Helix 32
AD5
A
719 731Right-handed alpha
Helix 33
AD6
A
737 751Right-handed alpha
Helix 34
AD7
A
777 813Right-handed alpha
Helix 35
AD8
A
842 848Right-handed alpha
Helix 36
AD9
A
857 873Right-handed alpha
Helix 37
AE1
A
879 890Right-handed alpha
Helix 38
AE2
A
890 900Right-handed alpha
Helix 39
AE3
A
906 911Right-handed 310
Helix 40
AE4
A
913 930Right-handed alpha
Helix 41
AE5
A
932 935Right-handed 310
Helix 42
AE6
A
948 959Right-handed alpha
Helix 43
AE7
A
960 967Right-handed alpha
Helix 44
AE8
A
977 997Right-handed alpha
Helix 45
AE9
A
998 1004Right-handed alpha
Helix 46
AF1
A
1009 1021Right-handed alpha
Helix 47
AF2
A
1025 1038Right-handed alpha
Helix 48
AF3
A
1046 1066Right-handed alpha
Helix 49
AF4
A
1067 1085Right-handed alpha
Helix 50
AF5
A
1089 1094Right-handed alpha
Helix 51
AF6
A
1149 1181Right-handed alpha
Helix 52
AF7
A
1197 1213Right-handed alpha
Helix 53
AF8
A
1216 1229Right-handed alpha
Helix 54
AF9
A
1242 1244Right-handed 310
Helix 55
AG1
A
1245 1260Right-handed alpha
Helix 56
AG2
A
1264 1281Right-handed alpha
Helix 57
AG3
A
1283 1293Right-handed alpha
Helix 58
AG4
A
1295 1301Right-handed alpha
Helix 59
AG5
A
1305 1310Right-handed alpha
Helix 60
AG6
A
1339 1344Right-handed alpha
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There are 11 sheets in PDB entry 8Q63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
72 77parallel
Strand 3
B
49 53parallel
Strand 4
B
132 137parallel
Strand 5
B
168 173parallel
Strand 6
B
242 249anti-parallel
Strand 7
B
200 202anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
227 228parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
648 651anti-parallel
Strand 3
A
634 636anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 619first strand
Strand 2
A
626 632anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 736first strand
Strand 2
A
849 851anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 824first strand
Strand 2
A
830 832anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
937 938anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
942 944first strand
Strand 2
A
1190 1193anti-parallel
Strand 3
A
1185 1187anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1087first strand
Strand 2
A
1233 1238anti-parallel
Strand 3
A
1321 1326anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1111first strand
Strand 2
A
1117 1119anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1131first strand
Strand 2
A
1136 1140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il