Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q65 entry

There are 8 chains in PDB entry 8Q65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	GLU 495
B	VAL 12	GLU 495
C	VAL 12	GLU 495
D	VAL 12	GLU 495
E	VAL 12	GLU 495
F	VAL 12	GLU 495
G	VAL 12	GLU 495
H	VAL 12	GLU 495

There are131 helices in PDB entry 8Q65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	32	Right-handed 310
Helix 2	AA2	A	74	84	Right-handed alpha
Helix 3	AA3	A	95	110	Right-handed alpha
Helix 4	AA4	A	125	137	Right-handed alpha
Helix 5	AA5	A	156	160	Right-handed alpha
Helix 6	AA6	A	168	173	Right-handed alpha
Helix 7	AA7	A	186	198	Right-handed alpha
Helix 8	AA8	A	217	226	Right-handed alpha
Helix 9	AA9	A	246	260	Right-handed alpha
Helix 10	AB1	A	273	288	Right-handed alpha
Helix 11	AB2	A	300	311	Right-handed alpha
Helix 12	AB3	A	325	332	Right-handed alpha
Helix 13	AB4	A	336	349	Right-handed alpha
Helix 14	AB5	A	350	352	Right-handed 310
Helix 15	AB6	A	363	373	Right-handed alpha
Helix 16	AB7	A	435	439	Right-handed 310
Helix 17	AB8	A	453	473	Right-handed alpha
Helix 18	AB9	A	476	481	Right-handed alpha
Helix 19	AC1	B	30	32	Right-handed 310
Helix 20	AC2	B	44	48	Right-handed 310
Helix 21	AC3	B	74	84	Right-handed alpha
Helix 22	AC4	B	95	109	Right-handed alpha
Helix 23	AC5	B	246	260	Right-handed alpha
Helix 24	AC6	B	273	288	Right-handed alpha
Helix 25	AC7	B	300	310	Right-handed alpha
Helix 26	AC8	B	325	332	Right-handed alpha
Helix 27	AC9	B	336	349	Right-handed alpha
Helix 28	AD1	B	350	352	Right-handed 310
Helix 29	AD2	B	363	373	Right-handed alpha
Helix 30	AD3	B	435	439	Right-handed 310
Helix 31	AD4	B	453	473	Right-handed alpha
Helix 32	AD5	B	476	481	Right-handed alpha
Helix 33	AD6	B	490	494	Right-handed 310
Helix 34	AD7	C	30	32	Right-handed 310
Helix 35	AD8	C	44	48	Right-handed 310
Helix 36	AD9	C	74	84	Right-handed alpha
Helix 37	AE1	C	95	109	Right-handed alpha
Helix 38	AE2	C	246	260	Right-handed alpha
Helix 39	AE3	C	273	288	Right-handed alpha
Helix 40	AE4	C	300	310	Right-handed alpha
Helix 41	AE5	C	325	331	Right-handed alpha
Helix 42	AE6	C	336	349	Right-handed alpha
Helix 43	AE7	C	350	352	Right-handed 310
Helix 44	AE8	C	363	373	Right-handed alpha
Helix 45	AE9	C	381	385	Right-handed 310
Helix 46	AF1	C	435	439	Right-handed 310
Helix 47	AF2	C	453	473	Right-handed alpha
Helix 48	AF3	C	476	481	Right-handed alpha
Helix 49	AF4	C	490	494	Right-handed 310
Helix 50	AF5	D	30	32	Right-handed 310
Helix 51	AF6	D	44	48	Right-handed 310
Helix 52	AF7	D	74	84	Right-handed alpha
Helix 53	AF8	D	95	109	Right-handed alpha
Helix 54	AF9	D	246	259	Right-handed alpha
Helix 55	AG1	D	273	288	Right-handed alpha
Helix 56	AG2	D	300	310	Right-handed alpha
Helix 57	AG3	D	325	331	Right-handed alpha
Helix 58	AG4	D	336	349	Right-handed alpha
Helix 59	AG5	D	350	352	Right-handed 310
Helix 60	AG6	D	363	373	Right-handed alpha
Helix 61	AG7	D	381	385	Right-handed 310
Helix 62	AG8	D	435	440	Right-handed alpha
Helix 63	AG9	D	453	473	Right-handed alpha
Helix 64	AH1	D	476	481	Right-handed alpha
Helix 65	AH2	D	490	494	Right-handed 310
Helix 66	AH3	E	30	32	Right-handed 310
Helix 67	AH4	E	74	84	Right-handed alpha
Helix 68	AH5	E	95	108	Right-handed alpha
Helix 69	AH6	E	125	137	Right-handed alpha
Helix 70	AH7	E	156	160	Right-handed alpha
Helix 71	AH8	E	169	173	Right-handed 310
Helix 72	AH9	E	186	198	Right-handed alpha
Helix 73	AI1	E	217	226	Right-handed alpha
Helix 74	AI2	E	246	259	Right-handed alpha
Helix 75	AI3	E	273	288	Right-handed alpha
Helix 76	AI4	E	300	310	Right-handed alpha
Helix 77	AI5	E	325	332	Right-handed alpha
Helix 78	AI6	E	336	349	Right-handed alpha
Helix 79	AI7	E	350	352	Right-handed 310
Helix 80	AI8	E	363	373	Right-handed alpha
Helix 81	AI9	E	381	386	Right-handed alpha
Helix 82	AJ1	E	435	439	Right-handed 310
Helix 83	AJ2	E	453	473	Right-handed alpha
Helix 84	AJ3	E	476	481	Right-handed alpha
Helix 85	AJ4	E	490	494	Right-handed 310
Helix 86	AJ5	F	30	32	Right-handed 310
Helix 87	AJ6	F	74	84	Right-handed alpha
Helix 88	AJ7	F	95	109	Right-handed alpha
Helix 89	AJ8	F	246	259	Right-handed alpha
Helix 90	AJ9	F	273	288	Right-handed alpha
Helix 91	AK1	F	300	311	Right-handed alpha
Helix 92	AK2	F	325	332	Right-handed alpha
Helix 93	AK3	F	336	349	Right-handed alpha
Helix 94	AK4	F	350	352	Right-handed 310
Helix 95	AK5	F	363	373	Right-handed alpha
Helix 96	AK6	F	381	385	Right-handed 310
Helix 97	AK7	F	435	440	Right-handed alpha
Helix 98	AK8	F	453	473	Right-handed alpha
Helix 99	AK9	F	476	481	Right-handed alpha
Helix 100	AL1	F	490	493	Right-handed 310
Helix 101	AL2	G	30	32	Right-handed 310
Helix 102	AL3	G	74	85	Right-handed alpha
Helix 103	AL4	G	95	109	Right-handed alpha
Helix 104	AL5	G	246	260	Right-handed alpha
Helix 105	AL6	G	273	288	Right-handed alpha
Helix 106	AL7	G	300	311	Right-handed alpha
Helix 107	AL8	G	325	331	Right-handed alpha
Helix 108	AL9	G	336	349	Right-handed alpha
Helix 109	AM1	G	350	352	Right-handed 310
Helix 110	AM2	G	363	373	Right-handed alpha
Helix 111	AM3	G	381	386	Right-handed alpha
Helix 112	AM4	G	435	439	Right-handed 310
Helix 113	AM5	G	453	473	Right-handed alpha
Helix 114	AM6	G	476	481	Right-handed alpha
Helix 115	AM7	G	490	494	Right-handed 310
Helix 116	AM8	H	30	32	Right-handed 310
Helix 117	AM9	H	44	48	Right-handed 310
Helix 118	AN1	H	74	84	Right-handed alpha
Helix 119	AN2	H	95	109	Right-handed alpha
Helix 120	AN3	H	246	259	Right-handed alpha
Helix 121	AN4	H	273	288	Right-handed alpha
Helix 122	AN5	H	300	310	Right-handed alpha
Helix 123	AN6	H	325	331	Right-handed alpha
Helix 124	AN7	H	336	349	Right-handed alpha
Helix 125	AN8	H	350	352	Right-handed 310
Helix 126	AN9	H	363	373	Right-handed alpha
Helix 127	AO1	H	381	385	Right-handed 310
Helix 128	AO2	H	435	439	Right-handed 310
Helix 129	AO3	H	453	473	Right-handed alpha
Helix 130	AO4	H	476	481	Right-handed alpha
Helix 131	AO5	H	490	494	Right-handed 310

There are 36 sheets in PDB entry 8Q65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	B	485	488	parallel
Strand 3	B	34	36	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	D	24	28	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	59	60	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	87	90	parallel
Strand 3	A	240	243	parallel
Strand 4	A	263	266	parallel
Strand 5	A	292	298	parallel
Strand 6	A	314	317	parallel
Strand 7	A	355	358	parallel
Strand 8	A	377	380	parallel
Strand 9	A	64	66	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	150	155	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	202	205	parallel
Strand 3	A	211	215	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	448	449	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	C	485	488	parallel
Strand 3	C	34	36	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	59	60	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	87	90	parallel
Strand 3	B	240	243	parallel
Strand 4	B	263	266	parallel
Strand 5	B	292	298	parallel
Strand 6	B	314	317	parallel
Strand 7	B	355	358	parallel
Strand 8	B	377	380	parallel
Strand 9	B	64	66	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	397	first strand
Strand 2	B	400	404	anti-parallel
Strand 3	B	448	449	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	28	first strand
Strand 2	D	485	488	parallel
Strand 3	D	34	36	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	59	60	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	87	90	parallel
Strand 3	C	240	243	parallel
Strand 4	C	263	266	parallel
Strand 5	C	292	298	parallel
Strand 6	C	314	317	parallel
Strand 7	C	355	358	parallel
Strand 8	C	377	380	parallel
Strand 9	C	64	66	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	400	404	anti-parallel
Strand 3	C	448	449	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	59	60	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	87	90	parallel
Strand 3	D	240	243	parallel
Strand 4	D	263	266	parallel
Strand 5	D	292	298	parallel
Strand 6	D	314	317	parallel
Strand 7	D	355	358	parallel
Strand 8	D	377	380	parallel
Strand 9	D	64	66	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	397	first strand
Strand 2	D	400	404	anti-parallel
Strand 3	D	448	449	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	28	first strand
Strand 2	H	485	488	parallel
Strand 3	H	34	36	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	485	488	anti-parallel
Strand 3	F	24	28	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	59	60	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	377	380	parallel
Strand 3	E	355	358	parallel
Strand 4	E	314	317	parallel
Strand 5	E	292	298	parallel
Strand 6	E	263	266	parallel
Strand 7	E	240	243	parallel
Strand 8	E	89	90	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	201	205	anti-parallel
Strand 4	E	181	182	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	144	first strand
Strand 2	E	150	155	anti-parallel
Strand 3	E	174	175	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	397	first strand
Strand 2	E	400	404	anti-parallel
Strand 3	E	448	449	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	485	488	anti-parallel
Strand 3	G	24	28	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	59	60	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	87	90	parallel
Strand 3	F	240	243	parallel
Strand 4	F	263	266	parallel
Strand 5	F	292	298	parallel
Strand 6	F	314	317	parallel
Strand 7	F	355	358	parallel
Strand 8	F	377	380	parallel
Strand 9	F	64	66	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	397	first strand
Strand 2	F	400	404	anti-parallel
Strand 3	F	448	449	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	36	first strand
Strand 2	G	485	488	anti-parallel
Strand 3	H	24	28	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	59	60	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	87	90	parallel
Strand 3	G	240	243	parallel
Strand 4	G	263	266	parallel
Strand 5	G	292	298	parallel
Strand 6	G	314	317	parallel
Strand 7	G	355	358	parallel
Strand 8	G	377	380	parallel
Strand 9	G	64	66	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	393	397	first strand
Strand 2	G	400	404	anti-parallel
Strand 3	G	448	449	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	53	first strand
Strand 2	H	59	60	anti-parallel

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There are 9 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	66	first strand
Strand 2	H	87	90	parallel
Strand 3	H	240	243	parallel
Strand 4	H	263	266	parallel
Strand 5	H	292	298	parallel
Strand 6	H	314	317	parallel
Strand 7	H	355	358	parallel
Strand 8	H	377	380	parallel
Strand 9	H	64	66	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	393	397	first strand
Strand 2	H	400	404	anti-parallel
Strand 3	H	448	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q65

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q65